miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5241 3' -58.4 NC_001798.1 + 38802 0.67 0.797867
Target:  5'- aCGcGGuuGGcGAGGCGGGCCAGGaUGa -3'
miRNA:   3'- -GCaCCugCUcUUCCGCCUGGUCCcAC- -5'
5241 3' -58.4 NC_001798.1 + 69526 0.67 0.797867
Target:  5'- gCGUGGcccGCGAGcucGcGCGGGCUGGuGGUGg -3'
miRNA:   3'- -GCACC---UGCUCuu-C-CGCCUGGUC-CCAC- -5'
5241 3' -58.4 NC_001798.1 + 56516 0.67 0.789019
Target:  5'- gGUGGAgCG-GAucguGGCGGuGCCGGGGc- -3'
miRNA:   3'- gCACCU-GCuCUu---CCGCC-UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 27224 0.67 0.780037
Target:  5'- gCG-GGGCGcggGGGAGGCGGcCgCGGGGg- -3'
miRNA:   3'- -GCaCCUGC---UCUUCCGCCuG-GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 44398 0.67 0.780037
Target:  5'- aCGUGGGCcGGGAGcaauggggucccGCGGcCCAGGGc- -3'
miRNA:   3'- -GCACCUGcUCUUC------------CGCCuGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 29924 0.67 0.780037
Target:  5'- gGUGGGCucGggGGCGGGacgcuugaCGGGGc- -3'
miRNA:   3'- gCACCUGcuCuuCCGCCUg-------GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 11658 0.67 0.779132
Target:  5'- cCGgGGGCGGGGgucgggucucgggGGGaGGACgGGGGUGu -3'
miRNA:   3'- -GCaCCUGCUCU-------------UCCgCCUGgUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 63263 0.67 0.761702
Target:  5'- gCGUcGGGgGcGggGGCGGAauaCAGGGg- -3'
miRNA:   3'- -GCA-CCUgCuCuuCCGCCUg--GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 11705 0.67 0.761702
Target:  5'- cCGUGGAgGGGuGGGuCGGGaggcuCCGGGGg- -3'
miRNA:   3'- -GCACCUgCUCuUCC-GCCU-----GGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 31804 0.67 0.761702
Target:  5'- --cGGGCGcGGAGGGaGGAcCCGGGGUc -3'
miRNA:   3'- gcaCCUGC-UCUUCCgCCU-GGUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 69167 0.67 0.761702
Target:  5'- --cGGGCGGagcccGAuGGCGGGCCAG-GUGg -3'
miRNA:   3'- gcaCCUGCU-----CUuCCGCCUGGUCcCAC- -5'
5241 3' -58.4 NC_001798.1 + 21529 0.67 0.752367
Target:  5'- gGUGGAUGGGuccucGCGGuacguaCAGGGUGg -3'
miRNA:   3'- gCACCUGCUCuuc--CGCCug----GUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 149930 0.67 0.752367
Target:  5'- --aGGAgGAGGAGGCGGcggcgaccgcgGCCuGGGa- -3'
miRNA:   3'- gcaCCUgCUCUUCCGCC-----------UGGuCCCac -5'
5241 3' -58.4 NC_001798.1 + 14989 0.68 0.74293
Target:  5'- -uUGGGCGGGggGGCGaGGCguguuGGGGg- -3'
miRNA:   3'- gcACCUGCUCuuCCGC-CUGg----UCCCac -5'
5241 3' -58.4 NC_001798.1 + 74515 0.68 0.74293
Target:  5'- gCG-GGGCGAGAucGGgGGGCuCGGGGc- -3'
miRNA:   3'- -GCaCCUGCUCUu-CCgCCUG-GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 147010 0.68 0.74293
Target:  5'- uCGgGGACccccGGGCGGGCCGGGGc- -3'
miRNA:   3'- -GCaCCUGcucuUCCGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 151589 0.68 0.74008
Target:  5'- gCGUGGGgcugcccuggcgcuCGGccGggGGcCGGGCCGGGGg- -3'
miRNA:   3'- -GCACCU--------------GCU--CuuCC-GCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 124565 0.68 0.7334
Target:  5'- gGUcGAUcucgGGGAGGGCGGcACCGGGGa- -3'
miRNA:   3'- gCAcCUG----CUCUUCCGCC-UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 101849 0.68 0.7334
Target:  5'- gCGUGGGuccCGGcGgcGGCGGAggGGGGUGg -3'
miRNA:   3'- -GCACCU---GCU-CuuCCGCCUggUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 142480 0.68 0.723788
Target:  5'- aCG-GGACGGcccccGAGGCGGcGCgGGGGUGc -3'
miRNA:   3'- -GCaCCUGCUc----UUCCGCC-UGgUCCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.