miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5242 3' -52.9 NC_001798.1 + 87975 0.66 0.978265
Target:  5'- gCGGgg-CUuggACgCGCCUCCCGggGgguCGGCa -3'
miRNA:   3'- -GCUauaGG---UG-GCGGAGGGCuuU---GUCG- -5'
5242 3' -52.9 NC_001798.1 + 118660 0.66 0.978265
Target:  5'- cCGAccAUCCGCCGCCagCUGgcGCucGCg -3'
miRNA:   3'- -GCUa-UAGGUGGCGGagGGCuuUGu-CG- -5'
5242 3' -52.9 NC_001798.1 + 92940 0.66 0.977313
Target:  5'- uCGGgc-CCGCCGCCguggcccugcgugCCCGGAACGu- -3'
miRNA:   3'- -GCUauaGGUGGCGGa------------GGGCUUUGUcg -5'
5242 3' -52.9 NC_001798.1 + 24936 0.66 0.975828
Target:  5'- uGAgcUCCGCCGCCgCgCCGccGCGGa -3'
miRNA:   3'- gCUauAGGUGGCGGaG-GGCuuUGUCg -5'
5242 3' -52.9 NC_001798.1 + 48352 0.66 0.975828
Target:  5'- aCGcgA-CCGCgGCCgCCCGggGCcGCc -3'
miRNA:   3'- -GCuaUaGGUGgCGGaGGGCuuUGuCG- -5'
5242 3' -52.9 NC_001798.1 + 70709 0.66 0.975828
Target:  5'- aGAUGUCC-CCGgUUCCCcuGggGCAacccgGCg -3'
miRNA:   3'- gCUAUAGGuGGCgGAGGG--CuuUGU-----CG- -5'
5242 3' -52.9 NC_001798.1 + 9754 0.66 0.975828
Target:  5'- -----aCCACCGCgUUCCGguACuGCg -3'
miRNA:   3'- gcuauaGGUGGCGgAGGGCuuUGuCG- -5'
5242 3' -52.9 NC_001798.1 + 86888 0.66 0.975828
Target:  5'- ----uUCCGCCGCCgggaacCCCGGcguGgAGCg -3'
miRNA:   3'- gcuauAGGUGGCGGa-----GGGCUu--UgUCG- -5'
5242 3' -52.9 NC_001798.1 + 91901 0.66 0.975828
Target:  5'- cCGccAUCCGCagGCCUCUCGAAucGCcGCu -3'
miRNA:   3'- -GCuaUAGGUGg-CGGAGGGCUU--UGuCG- -5'
5242 3' -52.9 NC_001798.1 + 102517 0.66 0.975573
Target:  5'- gGGUGUCCguaggccACCGUC-CCCGcgGcCGGCa -3'
miRNA:   3'- gCUAUAGG-------UGGCGGaGGGCuuU-GUCG- -5'
5242 3' -52.9 NC_001798.1 + 47445 0.66 0.974272
Target:  5'- cCGGUcUCCcucuuucccucccucGCCGCCUUCCGAcGCucucuGCc -3'
miRNA:   3'- -GCUAuAGG---------------UGGCGGAGGGCUuUGu----CG- -5'
5242 3' -52.9 NC_001798.1 + 119493 0.66 0.973196
Target:  5'- cCGGuUAUCCGCUaCC-CCUGAGGCGGg -3'
miRNA:   3'- -GCU-AUAGGUGGcGGaGGGCUUUGUCg -5'
5242 3' -52.9 NC_001798.1 + 7180 0.66 0.973196
Target:  5'- aCGGg--CCcCCGCa--CCGggGCGGCg -3'
miRNA:   3'- -GCUauaGGuGGCGgagGGCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 24392 0.66 0.973196
Target:  5'- -----gCCGCCGCCgcCCCGuugccgucGGCGGCg -3'
miRNA:   3'- gcuauaGGUGGCGGa-GGGCu-------UUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 31118 0.66 0.973196
Target:  5'- ---cGUCCcgcCCGCCcCCCGAAG-AGCg -3'
miRNA:   3'- gcuaUAGGu--GGCGGaGGGCUUUgUCG- -5'
5242 3' -52.9 NC_001798.1 + 140337 0.66 0.973196
Target:  5'- gCGAgua-CACgCGCCUCUCGc-ACAGCu -3'
miRNA:   3'- -GCUauagGUG-GCGGAGGGCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 31191 0.66 0.973196
Target:  5'- -----cCCGCCGCgaCCCGAc-CGGCg -3'
miRNA:   3'- gcuauaGGUGGCGgaGGGCUuuGUCG- -5'
5242 3' -52.9 NC_001798.1 + 126459 0.67 0.970363
Target:  5'- -----cCCugCGCaggUCCGAGACGGCc -3'
miRNA:   3'- gcuauaGGugGCGga-GGGCUUUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 128415 0.67 0.970363
Target:  5'- gCGGgg-CCugacgACCGCCUCCaCGcuGCGGUg -3'
miRNA:   3'- -GCUauaGG-----UGGCGGAGG-GCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 84899 0.67 0.970363
Target:  5'- ---cGUCCcccgcGCCGUCUCgCGAGACguAGCg -3'
miRNA:   3'- gcuaUAGG-----UGGCGGAGgGCUUUG--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.