miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5242 5' -63.8 NC_001798.1 + 59461 0.66 0.596466
Target:  5'- cCGCgUGCC-CGGGCgcggugaGGCGUucGGCCa -3'
miRNA:   3'- cGCG-GCGGaGCCCGaa-----CCGCA--CCGGg -5'
5242 5' -63.8 NC_001798.1 + 70372 0.66 0.596466
Target:  5'- uGCGCCuugcaccggGCCcaCGGGCUUccggagacGGCGcucuUGGCCg -3'
miRNA:   3'- -CGCGG---------CGGa-GCCCGAA--------CCGC----ACCGGg -5'
5242 5' -63.8 NC_001798.1 + 24711 0.66 0.596466
Target:  5'- cGCGCCcgggGCCcgCGGGCgcGGCc--GCCCc -3'
miRNA:   3'- -CGCGG----CGGa-GCCCGaaCCGcacCGGG- -5'
5242 5' -63.8 NC_001798.1 + 120179 0.66 0.599355
Target:  5'- cGCGCCGCCgggcggcucgcagUgauagaagaggagcuCGGGCcccgGGCcguUGGCCCc -3'
miRNA:   3'- -CGCGGCGG-------------A---------------GCCCGaa--CCGc--ACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 83355 0.65 0.60321
Target:  5'- gGCGUCGCCcgCgaacauaggcugcgGGGCgaacguguugUUGGCGUGGgucacCCCg -3'
miRNA:   3'- -CGCGGCGGa-G--------------CCCG----------AACCGCACC-----GGG- -5'
5242 5' -63.8 NC_001798.1 + 73207 0.66 0.577269
Target:  5'- gGCGUguuucgCGCCUCGGcGUUUcGGCcuuccgccGGCCCg -3'
miRNA:   3'- -CGCG------GCGGAGCC-CGAA-CCGca------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 72628 0.66 0.577269
Target:  5'- gGCGCa-CCUCGGGgUaugcgacgagcUGGC--GGCCCa -3'
miRNA:   3'- -CGCGgcGGAGCCCgA-----------ACCGcaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 96913 0.66 0.558211
Target:  5'- aCGCCGCC--GGGCUgucGGaCGccGCCCg -3'
miRNA:   3'- cGCGGCGGagCCCGAa--CC-GCacCGGG- -5'
5242 5' -63.8 NC_001798.1 + 51411 0.66 0.558211
Target:  5'- cCGCCGCCgUCGcgcacgaugacGGCcccggGGCGcGGCCUu -3'
miRNA:   3'- cGCGGCGG-AGC-----------CCGaa---CCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 58686 0.66 0.558211
Target:  5'- cCGCCGCCgucaGGGCcgcGGCGgcgcgggGGUCg -3'
miRNA:   3'- cGCGGCGGag--CCCGaa-CCGCa------CCGGg -5'
5242 5' -63.8 NC_001798.1 + 78537 0.66 0.56772
Target:  5'- -gGCCaCCgagCGGGUcaUGGCG-GGCCUg -3'
miRNA:   3'- cgCGGcGGa--GCCCGa-ACCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 1975 0.66 0.56772
Target:  5'- aGCGCCGagaCgUCGGG---GGCGcGGUCCa -3'
miRNA:   3'- -CGCGGCg--G-AGCCCgaaCCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 75830 0.66 0.56772
Target:  5'- -aGCCGCUucuccaUCGGaucaGGCGcUGGCCCa -3'
miRNA:   3'- cgCGGCGG------AGCCcgaaCCGC-ACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 135206 0.66 0.56772
Target:  5'- -gGCCGCCcucgCGGGCcucGGgGaGGCCg -3'
miRNA:   3'- cgCGGCGGa---GCCCGaa-CCgCaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 10149 0.66 0.5744
Target:  5'- cCGUCGUCgUGGGCaaUGGCGUGGauggagacguucguCCCa -3'
miRNA:   3'- cGCGGCGGaGCCCGa-ACCGCACC--------------GGG- -5'
5242 5' -63.8 NC_001798.1 + 85990 0.66 0.575356
Target:  5'- cCGCCGCCg-GGGCgcuggcgcaggGGgGUGaGCCg -3'
miRNA:   3'- cGCGGCGGagCCCGaa---------CCgCAC-CGGg -5'
5242 5' -63.8 NC_001798.1 + 23010 0.66 0.577269
Target:  5'- gGCGUCGUCUCGccgcGGCagcUGGCccugcUGGCCUc -3'
miRNA:   3'- -CGCGGCGGAGC----CCGa--ACCGc----ACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 67559 0.66 0.577269
Target:  5'- uCGCCGCCagGGGg--GGCGaccucgGGCUCc -3'
miRNA:   3'- cGCGGCGGagCCCgaaCCGCa-----CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 127939 0.66 0.577269
Target:  5'- gGCGggGCCcCGGGCgaaaaGGCccGGCCCg -3'
miRNA:   3'- -CGCggCGGaGCCCGaa---CCGcaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 25601 0.66 0.577269
Target:  5'- cGgGCCGCgC-CGGG---GGCG-GGCCCc -3'
miRNA:   3'- -CgCGGCG-GaGCCCgaaCCGCaCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.