miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 38186 0.67 0.625648
Target:  5'- gGGCCGCUGgucgaGCAGGaGGC-GCGGa- -3'
miRNA:   3'- -UCGGUGACaug--UGUCC-CCGcCGCCcg -5'
5245 3' -61.2 NC_001798.1 + 134208 0.67 0.615737
Target:  5'- -cCCGCUGgagcccCugGGGGacccgacccuGUGGCGGGCg -3'
miRNA:   3'- ucGGUGACau----GugUCCC----------CGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 36493 0.67 0.615737
Target:  5'- cGCCgGCgcgACGCGGGcGGCcgGGCGGGg -3'
miRNA:   3'- uCGG-UGacaUGUGUCC-CCG--CCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 34975 0.67 0.615737
Target:  5'- cGGCCGCcgagGU--GCGGGGGCcccuccGGCcgGGGCg -3'
miRNA:   3'- -UCGGUGa---CAugUGUCCCCG------CCG--CCCG- -5'
5245 3' -61.2 NC_001798.1 + 91284 0.67 0.615737
Target:  5'- uGCCGuCUGggugGCucccCGGGGGUuguGGgGGGCa -3'
miRNA:   3'- uCGGU-GACa---UGu---GUCCCCG---CCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 23993 0.67 0.615737
Target:  5'- cGGCUGCUGUACACGccggacgcGGaGGCGaUGGGg -3'
miRNA:   3'- -UCGGUGACAUGUGU--------CC-CCGCcGCCCg -5'
5245 3' -61.2 NC_001798.1 + 149170 0.67 0.612766
Target:  5'- cGGCCGgUGguccggugGGGGGCGGCuuccuucGGGCa -3'
miRNA:   3'- -UCGGUgACaugug---UCCCCGCCG-------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 38791 0.68 0.556744
Target:  5'- cGCCGCgcucgACGCGGuuGGCgaGGCGGGCc -3'
miRNA:   3'- uCGGUGaca--UGUGUCc-CCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 95298 0.68 0.556744
Target:  5'- gGGUUugUGUGCGCGGcgucgagucucGGG-GGCGGGg -3'
miRNA:   3'- -UCGGugACAUGUGUC-----------CCCgCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 64144 0.68 0.556744
Target:  5'- gGGUCGgUGcuCGCGGGGGagaCGGCGGGa -3'
miRNA:   3'- -UCGGUgACauGUGUCCCC---GCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 58986 0.68 0.556744
Target:  5'- cGGCCggGCga-ACGCGGGGGgGGCGcGGa -3'
miRNA:   3'- -UCGG--UGacaUGUGUCCCCgCCGC-CCg -5'
5245 3' -61.2 NC_001798.1 + 48509 0.68 0.556744
Target:  5'- -uUCGCUGUcaGCACgcguuuguggcgAGGGGCGGgagGGGCg -3'
miRNA:   3'- ucGGUGACA--UGUG------------UCCCCGCCg--CCCG- -5'
5245 3' -61.2 NC_001798.1 + 56158 0.68 0.556744
Target:  5'- cGGCgGCUuauaACGCccGGGGGaCGGCGGGg -3'
miRNA:   3'- -UCGgUGAca--UGUG--UCCCC-GCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 9160 0.68 0.566489
Target:  5'- cGCCGCcc-GCGCcgGGGGGCagggucucuGGCGGGUc -3'
miRNA:   3'- uCGGUGacaUGUG--UCCCCG---------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 14341 0.68 0.566489
Target:  5'- cGGUCGCguuUGUuguaucggACGCGGGGcCGGUGGGUg -3'
miRNA:   3'- -UCGGUG---ACA--------UGUGUCCCcGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 44291 0.68 0.566489
Target:  5'- uGCCGCUGccgAUGC--GGGCGG-GGGCg -3'
miRNA:   3'- uCGGUGACa--UGUGucCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 47216 0.68 0.566489
Target:  5'- cGCC-CUGUugGgaAGGGGUGGgcgugucguUGGGCg -3'
miRNA:   3'- uCGGuGACAugUg-UCCCCGCC---------GCCCG- -5'
5245 3' -61.2 NC_001798.1 + 24700 0.68 0.576276
Target:  5'- cGCCGCgcccccGCGCccGGGGCccGCGGGCg -3'
miRNA:   3'- uCGGUGaca---UGUGu-CCCCGc-CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 105556 0.68 0.577257
Target:  5'- cGCCugUGUucccaaacguccagcGCgucgaaaggguaguACGGGuccauguucgagGGCGGCGGGCg -3'
miRNA:   3'- uCGGugACA---------------UG--------------UGUCC------------CCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 104501 0.68 0.555773
Target:  5'- uGGCCGC-GUgccaaaaACGCGGcGGCGGCGcGGUu -3'
miRNA:   3'- -UCGGUGaCA-------UGUGUCcCCGCCGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.