Results 81 - 100 of 197 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 9844 | 0.68 | 0.527826 |
Target: 5'- aGGCCGgcGUGCugGGGGGaGGCGuGCu -3' miRNA: 3'- -UCGGUgaCAUGugUCCCCgCCGCcCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 27004 | 0.68 | 0.547049 |
Target: 5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3' miRNA: 3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 44487 | 0.68 | 0.547049 |
Target: 5'- gGGCCGg-GUGCGCccuuucGGGUGGUGGGUc -3' miRNA: 3'- -UCGGUgaCAUGUGuc----CCCGCCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 26308 | 0.68 | 0.548016 |
Target: 5'- cGCCGCUGcggcccgucuacgugGCGCuGGGGCGcgacgccguGCGcGGCg -3' miRNA: 3'- uCGGUGACa--------------UGUGuCCCCGC---------CGC-CCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 5229 | 0.68 | 0.580202 |
Target: 5'- cGCCugGCUGauauaguccucgggGCGCGcGGGGCGGgGGGa -3' miRNA: 3'- uCGG--UGACa-------------UGUGU-CCCCGCCgCCCg -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 105556 | 0.68 | 0.577257 |
Target: 5'- cGCCugUGUucccaaacguccagcGCgucgaaaggguaguACGGGuccauguucgagGGCGGCGGGCg -3' miRNA: 3'- uCGGugACA---------------UG--------------UGUCC------------CCGCCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 24700 | 0.68 | 0.576276 |
Target: 5'- cGCCGCgcccccGCGCccGGGGCccGCGGGCg -3' miRNA: 3'- uCGGUGaca---UGUGu-CCCCGc-CGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 47216 | 0.68 | 0.566489 |
Target: 5'- cGCC-CUGUugGgaAGGGGUGGgcgugucguUGGGCg -3' miRNA: 3'- uCGGuGACAugUg-UCCCCGCC---------GCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 44291 | 0.68 | 0.566489 |
Target: 5'- uGCCGCUGccgAUGC--GGGCGG-GGGCg -3' miRNA: 3'- uCGGUGACa--UGUGucCCCGCCgCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 14341 | 0.68 | 0.566489 |
Target: 5'- cGGUCGCguuUGUuguaucggACGCGGGGcCGGUGGGUg -3' miRNA: 3'- -UCGGUG---ACA--------UGUGUCCCcGCCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 9160 | 0.68 | 0.566489 |
Target: 5'- cGCCGCcc-GCGCcgGGGGGCagggucucuGGCGGGUc -3' miRNA: 3'- uCGGUGacaUGUG--UCCCCG---------CCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 56158 | 0.68 | 0.556744 |
Target: 5'- cGGCgGCUuauaACGCccGGGGGaCGGCGGGg -3' miRNA: 3'- -UCGgUGAca--UGUG--UCCCC-GCCGCCCg -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 104501 | 0.68 | 0.555773 |
Target: 5'- uGGCCGC-GUgccaaaaACGCGGcGGCGGCGcGGUu -3' miRNA: 3'- -UCGGUGaCA-------UGUGUCcCCGCCGC-CCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 48509 | 0.68 | 0.556744 |
Target: 5'- -uUCGCUGUcaGCACgcguuuguggcgAGGGGCGGgagGGGCg -3' miRNA: 3'- ucGGUGACA--UGUG------------UCCCCGCCg--CCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 58986 | 0.68 | 0.556744 |
Target: 5'- cGGCCggGCga-ACGCGGGGGgGGCGcGGa -3' miRNA: 3'- -UCGG--UGacaUGUGUCCCCgCCGC-CCg -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 64144 | 0.68 | 0.556744 |
Target: 5'- gGGUCGgUGcuCGCGGGGGagaCGGCGGGa -3' miRNA: 3'- -UCGGUgACauGUGUCCCC---GCCGCCCg -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 95298 | 0.68 | 0.556744 |
Target: 5'- gGGUUugUGUGCGCGGcgucgagucucGGG-GGCGGGg -3' miRNA: 3'- -UCGGugACAUGUGUC-----------CCCgCCGCCCg -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 38791 | 0.68 | 0.556744 |
Target: 5'- cGCCGCgcucgACGCGGuuGGCgaGGCGGGCc -3' miRNA: 3'- uCGGUGaca--UGUGUCc-CCG--CCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 18212 | 0.69 | 0.518308 |
Target: 5'- cAGCCuc---GC-CGGGGGaCGGUGGGCg -3' miRNA: 3'- -UCGGugacaUGuGUCCCC-GCCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 66752 | 0.69 | 0.508859 |
Target: 5'- cGCCAC-GUcCGCcuGGGGuGCGGCGGcGUg -3' miRNA: 3'- uCGGUGaCAuGUG--UCCC-CGCCGCC-CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home