Results 101 - 120 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 25595 | 0.69 | 0.490186 |
Target: 5'- uGGCCGCgGgcCGCGccGGgGGCGGGCc -3' miRNA: 3'- -UCGGUGaCauGUGUccCCgCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 35500 | 0.69 | 0.488336 |
Target: 5'- cGGCCACguaaacaaugACACAGGGGUucucuccgccgcGGCcGGCg -3' miRNA: 3'- -UCGGUGaca-------UGUGUCCCCG------------CCGcCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 114473 | 0.69 | 0.480969 |
Target: 5'- aGGCCAUUGcccugcuCACGGGGGaGGCccuggacgggacGGGCa -3' miRNA: 3'- -UCGGUGACau-----GUGUCCCCgCCG------------CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 149462 | 0.69 | 0.471838 |
Target: 5'- cGGCgGCUccACGCGGGGGCcGCGGcccGCa -3' miRNA: 3'- -UCGgUGAcaUGUGUCCCCGcCGCC---CG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 94993 | 0.69 | 0.471838 |
Target: 5'- cGGCCGcCUGggcccCGCA-GGGCGGCgcGGGCc -3' miRNA: 3'- -UCGGU-GACau---GUGUcCCCGCCG--CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 24150 | 0.69 | 0.471838 |
Target: 5'- -cCCACcugggGUACGCcauGGCGGCGGGCc -3' miRNA: 3'- ucGGUGa----CAUGUGuccCCGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 27477 | 0.69 | 0.471838 |
Target: 5'- cGUC-CUGccGCGCGGGGGCGggcGCGGGa -3' miRNA: 3'- uCGGuGACa-UGUGUCCCCGC---CGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 91558 | 0.69 | 0.47093 |
Target: 5'- gAGCCAgUGUGuggugucCGCGGGGGCGcCGcGGUu -3' miRNA: 3'- -UCGGUgACAU-------GUGUCCCCGCcGC-CCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 111610 | 0.69 | 0.498551 |
Target: 5'- cGGCCucCUGgagcCcCGGGGGCGGCagacucgcgucggGGGCg -3' miRNA: 3'- -UCGGu-GACau--GuGUCCCCGCCG-------------CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 35777 | 0.69 | 0.499484 |
Target: 5'- cGGCUGCgGUGCuuGGgucuccuucgucGGGCGGCGGGg -3' miRNA: 3'- -UCGGUGaCAUGugUC------------CCCGCCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 18212 | 0.69 | 0.518308 |
Target: 5'- cAGCCuc---GC-CGGGGGaCGGUGGGCg -3' miRNA: 3'- -UCGGugacaUGuGUCCCC-GCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 66752 | 0.69 | 0.508859 |
Target: 5'- cGCCAC-GUcCGCcuGGGGuGCGGCGGcGUg -3' miRNA: 3'- uCGGUGaCAuGUG--UCCC-CGCCGCC-CG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 36262 | 0.69 | 0.508859 |
Target: 5'- -uCCugUGUGgACcccggGGuGGGCGGCGGGg -3' miRNA: 3'- ucGGugACAUgUG-----UC-CCCGCCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 33372 | 0.69 | 0.508859 |
Target: 5'- cGGCCAg---ACcCuGGGGGUGGUGGGCa -3' miRNA: 3'- -UCGGUgacaUGuG-UCCCCGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 154397 | 0.69 | 0.508859 |
Target: 5'- gGGgCGCgaagGcGgGCGGcGGCGGCGGGCg -3' miRNA: 3'- -UCgGUGa---CaUgUGUCcCCGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 59 | 0.69 | 0.508859 |
Target: 5'- gGGgCGCgaagGcGgGCGGcGGCGGCGGGCg -3' miRNA: 3'- -UCgGUGa---CaUgUGUCcCCGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 28972 | 0.69 | 0.499484 |
Target: 5'- cGCCGCUccgccCGCcccaGGGGGCGGCGccGGCc -3' miRNA: 3'- uCGGUGAcau--GUG----UCCCCGCCGC--CCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 125636 | 0.69 | 0.499484 |
Target: 5'- cAGCUGCUGgccaaacauCGCGGGcgaGGCGG-GGGCg -3' miRNA: 3'- -UCGGUGACau-------GUGUCC---CCGCCgCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 109358 | 0.69 | 0.499484 |
Target: 5'- uGGCCGgcCUGgcCGCccGGGGaGCaGCGGGCu -3' miRNA: 3'- -UCGGU--GACauGUG--UCCC-CGcCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 14095 | 0.69 | 0.46821 |
Target: 5'- uAGCUGCUGUaccccgggcacccgACACAcaaucggggcgauGGGGUGG-GGGCa -3' miRNA: 3'- -UCGGUGACA--------------UGUGU-------------CCCCGCCgCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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