Results 141 - 160 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 85998 | 0.7 | 0.444988 |
Target: 5'- gGGgCGCUG-GCGCAGGGGgGugagccggagacGUGGGCg -3' miRNA: 3'- -UCgGUGACaUGUGUCCCCgC------------CGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 12698 | 0.7 | 0.444988 |
Target: 5'- aGGCCcggGuUGC-UGGGGGCGGCGGGg -3' miRNA: 3'- -UCGGugaC-AUGuGUCCCCGCCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 29896 | 0.7 | 0.444107 |
Target: 5'- cGGCUGCggGUugGgGGuggucgcGGGCGGUGGGCu -3' miRNA: 3'- -UCGGUGa-CAugUgUC-------CCCGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 2223 | 0.71 | 0.38505 |
Target: 5'- gGGCC-CgagGcGCGCAGcGGGCcgaaggcGGCGGGCg -3' miRNA: 3'- -UCGGuGa--CaUGUGUC-CCCG-------CCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 153773 | 0.71 | 0.383441 |
Target: 5'- gGGgCGCUGcggcccgcgcuccuUGCGCGGcGGCGGCGGGg -3' miRNA: 3'- -UCgGUGAC--------------AUGUGUCcCCGCCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 150901 | 0.71 | 0.377842 |
Target: 5'- cGCCGCccccGCGCcGGGGCgcucuucggggGGCGGGCg -3' miRNA: 3'- uCGGUGaca-UGUGuCCCCG-----------CCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 12025 | 0.71 | 0.377842 |
Target: 5'- cGCCACg--GC---GGGGCGGCGGGg -3' miRNA: 3'- uCGGUGacaUGuguCCCCGCCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 150362 | 0.71 | 0.377842 |
Target: 5'- cGuCCACcg-GCACGGcGGGCGGCgcGGGCc -3' miRNA: 3'- uC-GGUGacaUGUGUC-CCCGCCG--CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 147609 | 0.71 | 0.377842 |
Target: 5'- aGGCgGCgGggagAgGgGGGGGgGGCGGGCg -3' miRNA: 3'- -UCGgUGaCa---UgUgUCCCCgCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 63245 | 0.71 | 0.385856 |
Target: 5'- aGGCUgaggggaaaGCUG-GCGuCGGGGGCGG-GGGCg -3' miRNA: 3'- -UCGG---------UGACaUGU-GUCCCCGCCgCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 4072 | 0.71 | 0.385856 |
Target: 5'- cGGcCCGCgGUcgcCGCGGGGGUccgggccggGGCGGGCu -3' miRNA: 3'- -UC-GGUGaCAu--GUGUCCCCG---------CCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 124499 | 0.71 | 0.385856 |
Target: 5'- cGCCAUg--GCGgGGGGGgGGCugcGGGCg -3' miRNA: 3'- uCGGUGacaUGUgUCCCCgCCG---CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 36025 | 0.71 | 0.410563 |
Target: 5'- cGCCuugGCUGU-UugGGGGGUGGCGG-Cg -3' miRNA: 3'- uCGG---UGACAuGugUCCCCGCCGCCcG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 4214 | 0.71 | 0.410563 |
Target: 5'- cGgCGCUG---GCGGGGGC-GCGGGCg -3' miRNA: 3'- uCgGUGACaugUGUCCCCGcCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 38279 | 0.71 | 0.405543 |
Target: 5'- uGCCACguggcauucagacaGUACGgGGGGGCGacGUGGGUg -3' miRNA: 3'- uCGGUGa-------------CAUGUgUCCCCGC--CGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 150624 | 0.71 | 0.40139 |
Target: 5'- gGGCUcCUGggccGCGCGGGGcugucucGCGGgGGGCg -3' miRNA: 3'- -UCGGuGACa---UGUGUCCC-------CGCCgCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 145773 | 0.71 | 0.393982 |
Target: 5'- cGCCGCccaccccgggGUccACACAGGaGCGcGCGGGCg -3' miRNA: 3'- uCGGUGa---------CA--UGUGUCCcCGC-CGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 36784 | 0.71 | 0.393982 |
Target: 5'- cGCgGuCUGUGCACGGGGaccuCGGuUGGGCg -3' miRNA: 3'- uCGgU-GACAUGUGUCCCc---GCC-GCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 20170 | 0.72 | 0.362152 |
Target: 5'- gGGCaGCUcGcACACGGGcucGGCGGCGGGUu -3' miRNA: 3'- -UCGgUGA-CaUGUGUCC---CCGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 134975 | 0.72 | 0.354479 |
Target: 5'- uGCCGC-GUGCcUGGGGGCcuggcccgcGGUGGGCg -3' miRNA: 3'- uCGGUGaCAUGuGUCCCCG---------CCGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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