miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 147609 0.71 0.377842
Target:  5'- aGGCgGCgGggagAgGgGGGGGgGGCGGGCg -3'
miRNA:   3'- -UCGgUGaCa---UgUgUCCCCgCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 36784 0.71 0.393982
Target:  5'- cGCgGuCUGUGCACGGGGaccuCGGuUGGGCg -3'
miRNA:   3'- uCGgU-GACAUGUGUCCCc---GCC-GCCCG- -5'
5245 3' -61.2 NC_001798.1 + 145773 0.71 0.393982
Target:  5'- cGCCGCccaccccgggGUccACACAGGaGCGcGCGGGCg -3'
miRNA:   3'- uCGGUGa---------CA--UGUGUCCcCGC-CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 150901 0.71 0.377842
Target:  5'- cGCCGCccccGCGCcGGGGCgcucuucggggGGCGGGCg -3'
miRNA:   3'- uCGGUGaca-UGUGuCCCCG-----------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 63245 0.71 0.385856
Target:  5'- aGGCUgaggggaaaGCUG-GCGuCGGGGGCGG-GGGCg -3'
miRNA:   3'- -UCGG---------UGACaUGU-GUCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 150624 0.71 0.40139
Target:  5'- gGGCUcCUGggccGCGCGGGGcugucucGCGGgGGGCg -3'
miRNA:   3'- -UCGGuGACa---UGUGUCCC-------CGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 150362 0.71 0.377842
Target:  5'- cGuCCACcg-GCACGGcGGGCGGCgcGGGCc -3'
miRNA:   3'- uC-GGUGacaUGUGUC-CCCGCCG--CCCG- -5'
5245 3' -61.2 NC_001798.1 + 2223 0.71 0.38505
Target:  5'- gGGCC-CgagGcGCGCAGcGGGCcgaaggcGGCGGGCg -3'
miRNA:   3'- -UCGGuGa--CaUGUGUC-CCCG-------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 4072 0.71 0.385856
Target:  5'- cGGcCCGCgGUcgcCGCGGGGGUccgggccggGGCGGGCu -3'
miRNA:   3'- -UC-GGUGaCAu--GUGUCCCCG---------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 38279 0.71 0.405543
Target:  5'- uGCCACguggcauucagacaGUACGgGGGGGCGacGUGGGUg -3'
miRNA:   3'- uCGGUGa-------------CAUGUgUCCCCGC--CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 124499 0.71 0.385856
Target:  5'- cGCCAUg--GCGgGGGGGgGGCugcGGGCg -3'
miRNA:   3'- uCGGUGacaUGUgUCCCCgCCG---CCCG- -5'
5245 3' -61.2 NC_001798.1 + 36025 0.71 0.410563
Target:  5'- cGCCuugGCUGU-UugGGGGGUGGCGG-Cg -3'
miRNA:   3'- uCGG---UGACAuGugUCCCCGCCGCCcG- -5'
5245 3' -61.2 NC_001798.1 + 4214 0.71 0.410563
Target:  5'- cGgCGCUG---GCGGGGGC-GCGGGCg -3'
miRNA:   3'- uCgGUGACaugUGUCCCCGcCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 153773 0.71 0.383441
Target:  5'- gGGgCGCUGcggcccgcgcuccuUGCGCGGcGGCGGCGGGg -3'
miRNA:   3'- -UCgGUGAC--------------AUGUGUCcCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 23702 0.7 0.444988
Target:  5'- gGGCCGCUu--CACGGccGGGCGGCcccGGCg -3'
miRNA:   3'- -UCGGUGAcauGUGUC--CCCGCCGc--CCG- -5'
5245 3' -61.2 NC_001798.1 + 19767 0.7 0.453844
Target:  5'- uGGCCGCag-GgAUAGGGGCaggcGGCGGGg -3'
miRNA:   3'- -UCGGUGacaUgUGUCCCCG----CCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 139049 0.7 0.453844
Target:  5'- cAGCCGCUGcgGCu--GGaGGCcGCGGGCc -3'
miRNA:   3'- -UCGGUGACa-UGuguCC-CCGcCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 22287 0.7 0.462795
Target:  5'- uGCCGCgcggGCGgAGcGGCGGCGGcGCg -3'
miRNA:   3'- uCGGUGaca-UGUgUCcCCGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 36142 0.7 0.462795
Target:  5'- cGCCGgUGggGCGCGGcGGCGGuCGGGg -3'
miRNA:   3'- uCGGUgACa-UGUGUCcCCGCC-GCCCg -5'
5245 3' -61.2 NC_001798.1 + 2457 0.7 0.462795
Target:  5'- cAGCCGCccUGCGgGucGGGGCccucGGCGGGCc -3'
miRNA:   3'- -UCGGUGacAUGUgU--CCCCG----CCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.