Results 61 - 80 of 197 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 101859 | 0.7 | 0.436229 |
Target: 5'- cGGCgGCg--GCGgAGGGG-GGUGGGCg -3' miRNA: 3'- -UCGgUGacaUGUgUCCCCgCCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 121289 | 0.7 | 0.436229 |
Target: 5'- cGGCCGCcccgACGguGGGGCGGCcgcgaacuuccGGGUc -3' miRNA: 3'- -UCGGUGaca-UGUguCCCCGCCG-----------CCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 29896 | 0.7 | 0.444107 |
Target: 5'- cGGCUGCggGUugGgGGuggucgcGGGCGGUGGGCu -3' miRNA: 3'- -UCGGUGa-CAugUgUC-------CCCGCCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 12698 | 0.7 | 0.444988 |
Target: 5'- aGGCCcggGuUGC-UGGGGGCGGCGGGg -3' miRNA: 3'- -UCGGugaC-AUGuGUCCCCGCCGCCCg -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 85998 | 0.7 | 0.444988 |
Target: 5'- gGGgCGCUG-GCGCAGGGGgGugagccggagacGUGGGCg -3' miRNA: 3'- -UCgGUGACaUGUGUCCCCgC------------CGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 97593 | 0.7 | 0.444988 |
Target: 5'- gAGCCAg-GgGCGCAGGGGCcGGagagcugGGGCg -3' miRNA: 3'- -UCGGUgaCaUGUGUCCCCG-CCg------CCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 23702 | 0.7 | 0.444988 |
Target: 5'- gGGCCGCUu--CACGGccGGGCGGCcccGGCg -3' miRNA: 3'- -UCGGUGAcauGUGUC--CCCGCCGc--CCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 139049 | 0.7 | 0.453844 |
Target: 5'- cAGCCGCUGcgGCu--GGaGGCcGCGGGCc -3' miRNA: 3'- -UCGGUGACa-UGuguCC-CCGcCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 117687 | 0.7 | 0.436229 |
Target: 5'- cGGCgGCgUGUACGCGGGGGacaaGGaGGGg -3' miRNA: 3'- -UCGgUG-ACAUGUGUCCCCg---CCgCCCg -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 55989 | 0.7 | 0.42757 |
Target: 5'- aGGCCGCgg-GgGCgAGGGGCugguaGGCGGGUc -3' miRNA: 3'- -UCGGUGacaUgUG-UCCCCG-----CCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 30922 | 0.7 | 0.419014 |
Target: 5'- uGGCCGacgGUGagggcgGCGGGGGUcgggcggggGGCGGGCg -3' miRNA: 3'- -UCGGUga-CAUg-----UGUCCCCG---------CCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 2334 | 0.7 | 0.419014 |
Target: 5'- cGCCACg--GCGCGGGGaaGaGCGGGUg -3' miRNA: 3'- uCGGUGacaUGUGUCCCcgC-CGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 96018 | 0.7 | 0.419014 |
Target: 5'- -aUCACg--GCACAccggcGGGGCgGGCGGGCg -3' miRNA: 3'- ucGGUGacaUGUGU-----CCCCG-CCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 151163 | 0.7 | 0.419014 |
Target: 5'- uGCCg--GgcCACGGGGG-GGUGGGCg -3' miRNA: 3'- uCGGugaCauGUGUCCCCgCCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 40112 | 0.7 | 0.42757 |
Target: 5'- uAGCCAUguUGUAgguCGCcGGGGCugggauGGCGGGUg -3' miRNA: 3'- -UCGGUG--ACAU---GUGuCCCCG------CCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 85258 | 0.7 | 0.42757 |
Target: 5'- cGGCCGCgcgGggccGCGCgcgaggcuucggGGGGGCGG-GGGCc -3' miRNA: 3'- -UCGGUGa--Ca---UGUG------------UCCCCGCCgCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 25595 | 0.69 | 0.490186 |
Target: 5'- uGGCCGCgGgcCGCGccGGgGGCGGGCc -3' miRNA: 3'- -UCGGUGaCauGUGUccCCgCCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 35500 | 0.69 | 0.488336 |
Target: 5'- cGGCCACguaaacaaugACACAGGGGUucucuccgccgcGGCcGGCg -3' miRNA: 3'- -UCGGUGaca-------UGUGUCCCCG------------CCGcCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 94993 | 0.69 | 0.471838 |
Target: 5'- cGGCCGcCUGggcccCGCA-GGGCGGCgcGGGCc -3' miRNA: 3'- -UCGGU-GACau---GUGUcCCCGCCG--CCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 149462 | 0.69 | 0.471838 |
Target: 5'- cGGCgGCUccACGCGGGGGCcGCGGcccGCa -3' miRNA: 3'- -UCGgUGAcaUGUGUCCCCGcCGCC---CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home