miRNA display CGI


Results 121 - 140 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 26900 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 5082 0.68 0.537408
Target:  5'- gGGCgGCaGUGgGgGGGGGUGGuuGGCa -3'
miRNA:   3'- -UCGgUGaCAUgUgUCCCCGCCgcCCG- -5'
5245 3' -61.2 NC_001798.1 + 2371 0.68 0.535487
Target:  5'- cGGCCACggcccgcgggGCGCAGuaggccuccaGGGCGGCggccgaGGGCg -3'
miRNA:   3'- -UCGGUGaca-------UGUGUC----------CCCGCCG------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 84709 0.68 0.541257
Target:  5'- cAGCuCGCcGUGCACgcacgcGguguccugcguauguGGGGCGGCGGGg -3'
miRNA:   3'- -UCG-GUGaCAUGUG------U---------------CCCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 107368 0.68 0.541257
Target:  5'- cGCCAacacgGUGCgguaccugcagcgcgGCGGGaGGUGGCGGGa -3'
miRNA:   3'- uCGGUga---CAUG---------------UGUCC-CCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 146558 0.68 0.547049
Target:  5'- uGGCCGCgGgccaGCAGacGGGCcGCGGGCc -3'
miRNA:   3'- -UCGGUGaCaug-UGUC--CCCGcCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26810 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26840 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 15462 0.68 0.527826
Target:  5'- gGGUCGCguggGUAgACGuGGGCGGgGGGg -3'
miRNA:   3'- -UCGGUGa---CAUgUGUcCCCGCCgCCCg -5'
5245 3' -61.2 NC_001798.1 + 111815 0.68 0.537408
Target:  5'- cGGUCGCgg-GCGucCAGGGGCuGGCgcgGGGCg -3'
miRNA:   3'- -UCGGUGacaUGU--GUCCCCG-CCG---CCCG- -5'
5245 3' -61.2 NC_001798.1 + 78055 0.67 0.609796
Target:  5'- cGGCUGCUGcGCAUcgcggAGGGGcUccuggaaauggcccaGGCGGGCg -3'
miRNA:   3'- -UCGGUGACaUGUG-----UCCCC-G---------------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 4037 0.67 0.605838
Target:  5'- cGGCCACcGccGCGCGGGccCGGCGGcGCu -3'
miRNA:   3'- -UCGGUGaCa-UGUGUCCccGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 8551 0.67 0.605838
Target:  5'- gGGUCGCg--GCG-AGGGGUGG-GGGCg -3'
miRNA:   3'- -UCGGUGacaUGUgUCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 85815 0.67 0.605838
Target:  5'- gGGCgAUgacgGggggGgGCGGGGGCGGgCGGGg -3'
miRNA:   3'- -UCGgUGa---Ca---UgUGUCCCCGCC-GCCCg -5'
5245 3' -61.2 NC_001798.1 + 136587 0.67 0.595957
Target:  5'- aGGCCACacaGUcCguGCGGGGGaCGGgccCGGGCa -3'
miRNA:   3'- -UCGGUGa--CAuG--UGUCCCC-GCC---GCCCG- -5'
5245 3' -61.2 NC_001798.1 + 64700 0.67 0.595957
Target:  5'- aAGCCcucGCUGacguccgagaucUGgGCcgAGGcGGCGGUGGGCa -3'
miRNA:   3'- -UCGG---UGAC------------AUgUG--UCC-CCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 11648 0.67 0.595957
Target:  5'- -cCCugUGUcCcCGGGGGCGG-GGGUc -3'
miRNA:   3'- ucGGugACAuGuGUCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 150326 0.67 0.595957
Target:  5'- gAGCCuggGUcauGCGCGaccGGGGCGcGCGGuGCg -3'
miRNA:   3'- -UCGGugaCA---UGUGU---CCCCGC-CGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 70432 0.67 0.595957
Target:  5'- gGGCUGCUGgUGCACcGcauGGCGGUGGcGCu -3'
miRNA:   3'- -UCGGUGAC-AUGUGuCc--CCGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 91781 0.67 0.605838
Target:  5'- cGGCCACgcccccugccgaUG-ACGCGcGGGGCGuggggaccGUGGGCg -3'
miRNA:   3'- -UCGGUG------------ACaUGUGU-CCCCGC--------CGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.