miRNA display CGI


Results 61 - 80 of 197 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 55989 0.7 0.42757
Target:  5'- aGGCCGCgg-GgGCgAGGGGCugguaGGCGGGUc -3'
miRNA:   3'- -UCGGUGacaUgUG-UCCCCG-----CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 85258 0.7 0.42757
Target:  5'- cGGCCGCgcgGggccGCGCgcgaggcuucggGGGGGCGG-GGGCc -3'
miRNA:   3'- -UCGGUGa--Ca---UGUG------------UCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 40112 0.7 0.42757
Target:  5'- uAGCCAUguUGUAgguCGCcGGGGCugggauGGCGGGUg -3'
miRNA:   3'- -UCGGUG--ACAU---GUGuCCCCG------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 117687 0.7 0.436229
Target:  5'- cGGCgGCgUGUACGCGGGGGacaaGGaGGGg -3'
miRNA:   3'- -UCGgUG-ACAUGUGUCCCCg---CCgCCCg -5'
5245 3' -61.2 NC_001798.1 + 101859 0.7 0.436229
Target:  5'- cGGCgGCg--GCGgAGGGG-GGUGGGCg -3'
miRNA:   3'- -UCGgUGacaUGUgUCCCCgCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 121289 0.7 0.436229
Target:  5'- cGGCCGCcccgACGguGGGGCGGCcgcgaacuuccGGGUc -3'
miRNA:   3'- -UCGGUGaca-UGUguCCCCGCCG-----------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 29896 0.7 0.444107
Target:  5'- cGGCUGCggGUugGgGGuggucgcGGGCGGUGGGCu -3'
miRNA:   3'- -UCGGUGa-CAugUgUC-------CCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 12698 0.7 0.444988
Target:  5'- aGGCCcggGuUGC-UGGGGGCGGCGGGg -3'
miRNA:   3'- -UCGGugaC-AUGuGUCCCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 85998 0.7 0.444988
Target:  5'- gGGgCGCUG-GCGCAGGGGgGugagccggagacGUGGGCg -3'
miRNA:   3'- -UCgGUGACaUGUGUCCCCgC------------CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 23702 0.7 0.444988
Target:  5'- gGGCCGCUu--CACGGccGGGCGGCcccGGCg -3'
miRNA:   3'- -UCGGUGAcauGUGUC--CCCGCCGc--CCG- -5'
5245 3' -61.2 NC_001798.1 + 97593 0.7 0.444988
Target:  5'- gAGCCAg-GgGCGCAGGGGCcGGagagcugGGGCg -3'
miRNA:   3'- -UCGGUgaCaUGUGUCCCCG-CCg------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 19767 0.7 0.453844
Target:  5'- uGGCCGCag-GgAUAGGGGCaggcGGCGGGg -3'
miRNA:   3'- -UCGGUGacaUgUGUCCCCG----CCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 139049 0.7 0.453844
Target:  5'- cAGCCGCUGcgGCu--GGaGGCcGCGGGCc -3'
miRNA:   3'- -UCGGUGACa-UGuguCC-CCGcCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 22287 0.7 0.462795
Target:  5'- uGCCGCgcggGCGgAGcGGCGGCGGcGCg -3'
miRNA:   3'- uCGGUGaca-UGUgUCcCCGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 36142 0.7 0.462795
Target:  5'- cGCCGgUGggGCGCGGcGGCGGuCGGGg -3'
miRNA:   3'- uCGGUgACa-UGUGUCcCCGCC-GCCCg -5'
5245 3' -61.2 NC_001798.1 + 2457 0.7 0.462795
Target:  5'- cAGCCGCccUGCGgGucGGGGCccucGGCGGGCc -3'
miRNA:   3'- -UCGGUGacAUGUgU--CCCCG----CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 14095 0.69 0.46821
Target:  5'- uAGCUGCUGUaccccgggcacccgACACAcaaucggggcgauGGGGUGG-GGGCa -3'
miRNA:   3'- -UCGGUGACA--------------UGUGU-------------CCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 91558 0.69 0.47093
Target:  5'- gAGCCAgUGUGuggugucCGCGGGGGCGcCGcGGUu -3'
miRNA:   3'- -UCGGUgACAU-------GUGUCCCCGCcGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 27477 0.69 0.471838
Target:  5'- cGUC-CUGccGCGCGGGGGCGggcGCGGGa -3'
miRNA:   3'- uCGGuGACa-UGUGUCCCCGC---CGCCCg -5'
5245 3' -61.2 NC_001798.1 + 94993 0.69 0.471838
Target:  5'- cGGCCGcCUGggcccCGCA-GGGCGGCgcGGGCc -3'
miRNA:   3'- -UCGGU-GACau---GUGUcCCCGCCG--CCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.