miRNA display CGI


Results 81 - 100 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 149462 0.69 0.471838
Target:  5'- cGGCgGCUccACGCGGGGGCcGCGGcccGCa -3'
miRNA:   3'- -UCGgUGAcaUGUGUCCCCGcCGCC---CG- -5'
5245 3' -61.2 NC_001798.1 + 94993 0.69 0.471838
Target:  5'- cGGCCGcCUGggcccCGCA-GGGCGGCgcGGGCc -3'
miRNA:   3'- -UCGGU-GACau---GUGUcCCCGCCG--CCCG- -5'
5245 3' -61.2 NC_001798.1 + 114473 0.69 0.480969
Target:  5'- aGGCCAUUGcccugcuCACGGGGGaGGCccuggacgggacGGGCa -3'
miRNA:   3'- -UCGGUGACau-----GUGUCCCCgCCG------------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 35500 0.69 0.488336
Target:  5'- cGGCCACguaaacaaugACACAGGGGUucucuccgccgcGGCcGGCg -3'
miRNA:   3'- -UCGGUGaca-------UGUGUCCCCG------------CCGcCCG- -5'
5245 3' -61.2 NC_001798.1 + 152505 0.69 0.490186
Target:  5'- uAGCCGCgc-GCcccgGCGGGGGCGGaGGGa -3'
miRNA:   3'- -UCGGUGacaUG----UGUCCCCGCCgCCCg -5'
5245 3' -61.2 NC_001798.1 + 146027 0.69 0.490186
Target:  5'- cAGCCAag--GCGCGGuGGGgGGCGuGGUg -3'
miRNA:   3'- -UCGGUgacaUGUGUC-CCCgCCGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 25595 0.69 0.490186
Target:  5'- uGGCCGCgGgcCGCGccGGgGGCGGGCc -3'
miRNA:   3'- -UCGGUGaCauGUGUccCCgCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 111610 0.69 0.498551
Target:  5'- cGGCCucCUGgagcCcCGGGGGCGGCagacucgcgucggGGGCg -3'
miRNA:   3'- -UCGGu-GACau--GuGUCCCCGCCG-------------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 125636 0.69 0.499484
Target:  5'- cAGCUGCUGgccaaacauCGCGGGcgaGGCGG-GGGCg -3'
miRNA:   3'- -UCGGUGACau-------GUGUCC---CCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 109358 0.69 0.499484
Target:  5'- uGGCCGgcCUGgcCGCccGGGGaGCaGCGGGCu -3'
miRNA:   3'- -UCGGU--GACauGUG--UCCC-CGcCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 35777 0.69 0.499484
Target:  5'- cGGCUGCgGUGCuuGGgucuccuucgucGGGCGGCGGGg -3'
miRNA:   3'- -UCGGUGaCAUGugUC------------CCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 28972 0.69 0.499484
Target:  5'- cGCCGCUccgccCGCcccaGGGGGCGGCGccGGCc -3'
miRNA:   3'- uCGGUGAcau--GUG----UCCCCGCCGC--CCG- -5'
5245 3' -61.2 NC_001798.1 + 36262 0.69 0.508859
Target:  5'- -uCCugUGUGgACcccggGGuGGGCGGCGGGg -3'
miRNA:   3'- ucGGugACAUgUG-----UC-CCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 33372 0.69 0.508859
Target:  5'- cGGCCAg---ACcCuGGGGGUGGUGGGCa -3'
miRNA:   3'- -UCGGUgacaUGuG-UCCCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 154397 0.69 0.508859
Target:  5'- gGGgCGCgaagGcGgGCGGcGGCGGCGGGCg -3'
miRNA:   3'- -UCgGUGa---CaUgUGUCcCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 59 0.69 0.508859
Target:  5'- gGGgCGCgaagGcGgGCGGcGGCGGCGGGCg -3'
miRNA:   3'- -UCgGUGa---CaUgUGUCcCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 66752 0.69 0.508859
Target:  5'- cGCCAC-GUcCGCcuGGGGuGCGGCGGcGUg -3'
miRNA:   3'- uCGGUGaCAuGUG--UCCC-CGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 18212 0.69 0.518308
Target:  5'- cAGCCuc---GC-CGGGGGaCGGUGGGCg -3'
miRNA:   3'- -UCGGugacaUGuGUCCCC-GCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 113464 0.69 0.522107
Target:  5'- cGCCACccguguuuuggggguUGUGCGugauCAuGGGCGGCGcGGCc -3'
miRNA:   3'- uCGGUG---------------ACAUGU----GUcCCCGCCGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 15462 0.68 0.527826
Target:  5'- gGGUCGCguggGUAgACGuGGGCGGgGGGg -3'
miRNA:   3'- -UCGGUGa---CAUgUGUcCCCGCCgCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.