miRNA display CGI


Results 81 - 100 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 104501 0.68 0.555773
Target:  5'- uGGCCGC-GUgccaaaaACGCGGcGGCGGCGcGGUu -3'
miRNA:   3'- -UCGGUGaCA-------UGUGUCcCCGCCGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 26308 0.68 0.548016
Target:  5'- cGCCGCUGcggcccgucuacgugGCGCuGGGGCGcgacgccguGCGcGGCg -3'
miRNA:   3'- uCGGUGACa--------------UGUGuCCCCGC---------CGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 146558 0.68 0.547049
Target:  5'- uGGCCGCgGgccaGCAGacGGGCcGCGGGCc -3'
miRNA:   3'- -UCGGUGaCaug-UGUC--CCCGcCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26810 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26840 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26870 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26900 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26944 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26974 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 27004 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 44487 0.68 0.547049
Target:  5'- gGGCCGg-GUGCGCccuuucGGGUGGUGGGUc -3'
miRNA:   3'- -UCGGUgaCAUGUGuc----CCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 107368 0.68 0.541257
Target:  5'- cGCCAacacgGUGCgguaccugcagcgcgGCGGGaGGUGGCGGGa -3'
miRNA:   3'- uCGGUga---CAUG---------------UGUCC-CCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 84709 0.68 0.541257
Target:  5'- cAGCuCGCcGUGCACgcacgcGguguccugcguauguGGGGCGGCGGGg -3'
miRNA:   3'- -UCG-GUGaCAUGUG------U---------------CCCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 5082 0.68 0.537408
Target:  5'- gGGCgGCaGUGgGgGGGGGUGGuuGGCa -3'
miRNA:   3'- -UCGgUGaCAUgUgUCCCCGCCgcCCG- -5'
5245 3' -61.2 NC_001798.1 + 111815 0.68 0.537408
Target:  5'- cGGUCGCgg-GCGucCAGGGGCuGGCgcgGGGCg -3'
miRNA:   3'- -UCGGUGacaUGU--GUCCCCG-CCG---CCCG- -5'
5245 3' -61.2 NC_001798.1 + 2371 0.68 0.535487
Target:  5'- cGGCCACggcccgcgggGCGCAGuaggccuccaGGGCGGCggccgaGGGCg -3'
miRNA:   3'- -UCGGUGaca-------UGUGUC----------CCCGCCG------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 15462 0.68 0.527826
Target:  5'- gGGUCGCguggGUAgACGuGGGCGGgGGGg -3'
miRNA:   3'- -UCGGUGa---CAUgUGUcCCCGCCgCCCg -5'
5245 3' -61.2 NC_001798.1 + 9844 0.68 0.527826
Target:  5'- aGGCCGgcGUGCugGGGGGaGGCGuGCu -3'
miRNA:   3'- -UCGGUgaCAUGugUCCCCgCCGCcCG- -5'
5245 3' -61.2 NC_001798.1 + 113464 0.69 0.522107
Target:  5'- cGCCACccguguuuuggggguUGUGCGugauCAuGGGCGGCGcGGCc -3'
miRNA:   3'- uCGGUG---------------ACAUGU----GUcCCCGCCGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 18212 0.69 0.518308
Target:  5'- cAGCCuc---GC-CGGGGGaCGGUGGGCg -3'
miRNA:   3'- -UCGGugacaUGuGUCCCC-GCCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.