Results 121 - 140 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 14095 | 0.69 | 0.46821 |
Target: 5'- uAGCUGCUGUaccccgggcacccgACACAcaaucggggcgauGGGGUGG-GGGCa -3' miRNA: 3'- -UCGGUGACA--------------UGUGU-------------CCCCGCCgCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 2457 | 0.7 | 0.462795 |
Target: 5'- cAGCCGCccUGCGgGucGGGGCccucGGCGGGCc -3' miRNA: 3'- -UCGGUGacAUGUgU--CCCCG----CCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 36142 | 0.7 | 0.462795 |
Target: 5'- cGCCGgUGggGCGCGGcGGCGGuCGGGg -3' miRNA: 3'- uCGGUgACa-UGUGUCcCCGCC-GCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 22287 | 0.7 | 0.462795 |
Target: 5'- uGCCGCgcggGCGgAGcGGCGGCGGcGCg -3' miRNA: 3'- uCGGUGaca-UGUgUCcCCGCCGCC-CG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 19767 | 0.7 | 0.453844 |
Target: 5'- uGGCCGCag-GgAUAGGGGCaggcGGCGGGg -3' miRNA: 3'- -UCGGUGacaUgUGUCCCCG----CCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 139049 | 0.7 | 0.453844 |
Target: 5'- cAGCCGCUGcgGCu--GGaGGCcGCGGGCc -3' miRNA: 3'- -UCGGUGACa-UGuguCC-CCGcCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 23702 | 0.7 | 0.444988 |
Target: 5'- gGGCCGCUu--CACGGccGGGCGGCcccGGCg -3' miRNA: 3'- -UCGGUGAcauGUGUC--CCCGCCGc--CCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 97593 | 0.7 | 0.444988 |
Target: 5'- gAGCCAg-GgGCGCAGGGGCcGGagagcugGGGCg -3' miRNA: 3'- -UCGGUgaCaUGUGUCCCCG-CCg------CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 85998 | 0.7 | 0.444988 |
Target: 5'- gGGgCGCUG-GCGCAGGGGgGugagccggagacGUGGGCg -3' miRNA: 3'- -UCgGUGACaUGUGUCCCCgC------------CGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 12698 | 0.7 | 0.444988 |
Target: 5'- aGGCCcggGuUGC-UGGGGGCGGCGGGg -3' miRNA: 3'- -UCGGugaC-AUGuGUCCCCGCCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 29896 | 0.7 | 0.444107 |
Target: 5'- cGGCUGCggGUugGgGGuggucgcGGGCGGUGGGCu -3' miRNA: 3'- -UCGGUGa-CAugUgUC-------CCCGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 117687 | 0.7 | 0.436229 |
Target: 5'- cGGCgGCgUGUACGCGGGGGacaaGGaGGGg -3' miRNA: 3'- -UCGgUG-ACAUGUGUCCCCg---CCgCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 101859 | 0.7 | 0.436229 |
Target: 5'- cGGCgGCg--GCGgAGGGG-GGUGGGCg -3' miRNA: 3'- -UCGgUGacaUGUgUCCCCgCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 121289 | 0.7 | 0.436229 |
Target: 5'- cGGCCGCcccgACGguGGGGCGGCcgcgaacuuccGGGUc -3' miRNA: 3'- -UCGGUGaca-UGUguCCCCGCCG-----------CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 55989 | 0.7 | 0.42757 |
Target: 5'- aGGCCGCgg-GgGCgAGGGGCugguaGGCGGGUc -3' miRNA: 3'- -UCGGUGacaUgUG-UCCCCG-----CCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 85258 | 0.7 | 0.42757 |
Target: 5'- cGGCCGCgcgGggccGCGCgcgaggcuucggGGGGGCGG-GGGCc -3' miRNA: 3'- -UCGGUGa--Ca---UGUG------------UCCCCGCCgCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 40112 | 0.7 | 0.42757 |
Target: 5'- uAGCCAUguUGUAgguCGCcGGGGCugggauGGCGGGUg -3' miRNA: 3'- -UCGGUG--ACAU---GUGuCCCCG------CCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 120564 | 0.7 | 0.419014 |
Target: 5'- aGGCCGCUGUugGUGGuGGUGGagGGGCg -3' miRNA: 3'- -UCGGUGACAugUGUCcCCGCCg-CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 96018 | 0.7 | 0.419014 |
Target: 5'- -aUCACg--GCACAccggcGGGGCgGGCGGGCg -3' miRNA: 3'- ucGGUGacaUGUGU-----CCCCG-CCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 2334 | 0.7 | 0.419014 |
Target: 5'- cGCCACg--GCGCGGGGaaGaGCGGGUg -3' miRNA: 3'- uCGGUGacaUGUGUCCCcgC-CGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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