miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 28972 0.69 0.499484
Target:  5'- cGCCGCUccgccCGCcccaGGGGGCGGCGccGGCc -3'
miRNA:   3'- uCGGUGAcau--GUG----UCCCCGCCGC--CCG- -5'
5245 3' -61.2 NC_001798.1 + 29399 0.66 0.688874
Target:  5'- gGGCCGCgccgGcgggGCGcCGGGGGgacucccaucugcguCGGCGGGg -3'
miRNA:   3'- -UCGGUGa---Ca---UGU-GUCCCC---------------GCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 29896 0.7 0.444107
Target:  5'- cGGCUGCggGUugGgGGuggucgcGGGCGGUGGGCu -3'
miRNA:   3'- -UCGGUGa-CAugUgUC-------CCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 30922 0.7 0.419014
Target:  5'- uGGCCGacgGUGagggcgGCGGGGGUcgggcggggGGCGGGCg -3'
miRNA:   3'- -UCGGUga-CAUg-----UGUCCCCG---------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 31141 0.81 0.097064
Target:  5'- cGCCcCg--GCGCGGGGGCGGCGGuGCg -3'
miRNA:   3'- uCGGuGacaUGUGUCCCCGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 31336 0.72 0.324945
Target:  5'- cGGCCgGCggggGgcgcGCGCAGGcGCGGCGGGUg -3'
miRNA:   3'- -UCGG-UGa---Ca---UGUGUCCcCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 31853 0.67 0.635564
Target:  5'- uGCCGCcccccACGCcgcggaGGGGGCGGCGGcccGCc -3'
miRNA:   3'- uCGGUGaca--UGUG------UCCCCGCCGCC---CG- -5'
5245 3' -61.2 NC_001798.1 + 33372 0.69 0.508859
Target:  5'- cGGCCAg---ACcCuGGGGGUGGUGGGCa -3'
miRNA:   3'- -UCGGUgacaUGuG-UCCCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 34095 0.75 0.225316
Target:  5'- gGGUgACcg-GCGCguGGGGGCGGUGGGCg -3'
miRNA:   3'- -UCGgUGacaUGUG--UCCCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 34624 0.66 0.704478
Target:  5'- cGGCgGCg--GCGgGGGGGgGGgGGGg -3'
miRNA:   3'- -UCGgUGacaUGUgUCCCCgCCgCCCg -5'
5245 3' -61.2 NC_001798.1 + 34975 0.67 0.615737
Target:  5'- cGGCCGCcgagGU--GCGGGGGCcccuccGGCcgGGGCg -3'
miRNA:   3'- -UCGGUGa---CAugUGUCCCCG------CCG--CCCG- -5'
5245 3' -61.2 NC_001798.1 + 35404 0.7 0.418164
Target:  5'- cGGCCGCcGgaugccCGCGGGGGCcuaaugcGGCGGGa -3'
miRNA:   3'- -UCGGUGaCau----GUGUCCCCG-------CCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 35500 0.69 0.488336
Target:  5'- cGGCCACguaaacaaugACACAGGGGUucucuccgccgcGGCcGGCg -3'
miRNA:   3'- -UCGGUGaca-------UGUGUCCCCG------------CCGcCCG- -5'
5245 3' -61.2 NC_001798.1 + 35777 0.69 0.499484
Target:  5'- cGGCUGCgGUGCuuGGgucuccuucgucGGGCGGCGGGg -3'
miRNA:   3'- -UCGGUGaCAUGugUC------------CCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 36025 0.71 0.410563
Target:  5'- cGCCuugGCUGU-UugGGGGGUGGCGG-Cg -3'
miRNA:   3'- uCGG---UGACAuGugUCCCCGCCGCCcG- -5'
5245 3' -61.2 NC_001798.1 + 36072 0.73 0.304021
Target:  5'- aGGCUGCgg-GCGCGGGGuaGGUGGGUg -3'
miRNA:   3'- -UCGGUGacaUGUGUCCCcgCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 36142 0.7 0.462795
Target:  5'- cGCCGgUGggGCGCGGcGGCGGuCGGGg -3'
miRNA:   3'- uCGGUgACa-UGUGUCcCCGCC-GCCCg -5'
5245 3' -61.2 NC_001798.1 + 36262 0.69 0.508859
Target:  5'- -uCCugUGUGgACcccggGGuGGGCGGCGGGg -3'
miRNA:   3'- ucGGugACAUgUG-----UC-CCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 36407 0.67 0.635564
Target:  5'- gGGCCcccCUGccGgGC-GGGGCGGUGGGg -3'
miRNA:   3'- -UCGGu--GACa-UgUGuCCCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 36493 0.67 0.615737
Target:  5'- cGCCgGCgcgACGCGGGcGGCcgGGCGGGg -3'
miRNA:   3'- uCGG-UGacaUGUGUCC-CCG--CCGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.