miRNA display CGI


Results 81 - 100 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 36689 0.67 0.595957
Target:  5'- -aUCACgUGUGCGCAGGGgaggggaggacGCGGgGGaGCa -3'
miRNA:   3'- ucGGUG-ACAUGUGUCCC-----------CGCCgCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 36784 0.71 0.393982
Target:  5'- cGCgGuCUGUGCACGGGGaccuCGGuUGGGCg -3'
miRNA:   3'- uCGgU-GACAUGUGUCCCc---GCC-GCCCG- -5'
5245 3' -61.2 NC_001798.1 + 38186 0.67 0.625648
Target:  5'- gGGCCGCUGgucgaGCAGGaGGC-GCGGa- -3'
miRNA:   3'- -UCGGUGACaug--UGUCC-CCGcCGCCcg -5'
5245 3' -61.2 NC_001798.1 + 38279 0.71 0.405543
Target:  5'- uGCCACguggcauucagacaGUACGgGGGGGCGacGUGGGUg -3'
miRNA:   3'- uCGGUGa-------------CAUGUgUCCCCGC--CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 38791 0.68 0.556744
Target:  5'- cGCCGCgcucgACGCGGuuGGCgaGGCGGGCc -3'
miRNA:   3'- uCGGUGaca--UGUGUCc-CCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 40112 0.7 0.42757
Target:  5'- uAGCCAUguUGUAgguCGCcGGGGCugggauGGCGGGUg -3'
miRNA:   3'- -UCGGUG--ACAU---GUGuCCCCG------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 42748 0.66 0.645477
Target:  5'- cGUCGCcc-GCACAGacGGGCGGCGcGCg -3'
miRNA:   3'- uCGGUGacaUGUGUC--CCCGCCGCcCG- -5'
5245 3' -61.2 NC_001798.1 + 43465 0.78 0.152838
Target:  5'- -cCCGCaGUACGCGGGGGCGGgcgugaGGGCc -3'
miRNA:   3'- ucGGUGaCAUGUGUCCCCGCCg-----CCCG- -5'
5245 3' -61.2 NC_001798.1 + 44291 0.68 0.566489
Target:  5'- uGCCGCUGccgAUGC--GGGCGG-GGGCg -3'
miRNA:   3'- uCGGUGACa--UGUGucCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 44487 0.68 0.547049
Target:  5'- gGGCCGg-GUGCGCccuuucGGGUGGUGGGUc -3'
miRNA:   3'- -UCGGUgaCAUGUGuc----CCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 45244 0.66 0.684954
Target:  5'- uGGCCACcauccugcagaUGUACAUgucgguGGGGGCcGCGGa- -3'
miRNA:   3'- -UCGGUG-----------ACAUGUG------UCCCCGcCGCCcg -5'
5245 3' -61.2 NC_001798.1 + 47216 0.68 0.566489
Target:  5'- cGCC-CUGUugGgaAGGGGUGGgcgugucguUGGGCg -3'
miRNA:   3'- uCGGuGACAugUg-UCCCCGCC---------GCCCG- -5'
5245 3' -61.2 NC_001798.1 + 48509 0.68 0.556744
Target:  5'- -uUCGCUGUcaGCACgcguuuguggcgAGGGGCGGgagGGGCg -3'
miRNA:   3'- ucGGUGACA--UGUG------------UCCCCGCCg--CCCG- -5'
5245 3' -61.2 NC_001798.1 + 51307 0.66 0.693764
Target:  5'- gGGCCcgaUGgacccACGCGacguuuuGGGGCGGgUGGGCg -3'
miRNA:   3'- -UCGGug-ACa----UGUGU-------CCCCGCC-GCCCG- -5'
5245 3' -61.2 NC_001798.1 + 52607 0.67 0.604849
Target:  5'- uGGCCGCguUugACGGcGGGUcgacggcccccgaGGUGGGCa -3'
miRNA:   3'- -UCGGUGacAugUGUC-CCCG-------------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 53633 0.66 0.704478
Target:  5'- cGCCGCggccaaGUACGCcgccGcGGUGGCGGGg -3'
miRNA:   3'- uCGGUGa-----CAUGUGu---CcCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 55989 0.7 0.42757
Target:  5'- aGGCCGCgg-GgGCgAGGGGCugguaGGCGGGUc -3'
miRNA:   3'- -UCGGUGacaUgUG-UCCCCG-----CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 56158 0.68 0.556744
Target:  5'- cGGCgGCUuauaACGCccGGGGGaCGGCGGGg -3'
miRNA:   3'- -UCGgUGAca--UGUG--UCCCC-GCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 58687 0.67 0.586101
Target:  5'- cGCCGCcGU---CAGGGccGCGGCGGcGCg -3'
miRNA:   3'- uCGGUGaCAuguGUCCC--CGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 58986 0.68 0.556744
Target:  5'- cGGCCggGCga-ACGCGGGGGgGGCGcGGa -3'
miRNA:   3'- -UCGG--UGacaUGUGUCCCCgCCGC-CCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.