Results 101 - 120 of 197 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 59669 | 0.79 | 0.116007 |
Target: 5'- gGGCgACUcGgcuCGCguGGGGGCGGCGGGCa -3' miRNA: 3'- -UCGgUGA-Cau-GUG--UCCCCGCCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 61313 | 1.1 | 0.000756 |
Target: 5'- cAGCCACUGUACACAGGGGCGGCGGGCu -3' miRNA: 3'- -UCGGUGACAUGUGUCCCCGCCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 63245 | 0.71 | 0.385856 |
Target: 5'- aGGCUgaggggaaaGCUG-GCGuCGGGGGCGG-GGGCg -3' miRNA: 3'- -UCGG---------UGACaUGU-GUCCCCGCCgCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 64144 | 0.68 | 0.556744 |
Target: 5'- gGGUCGgUGcuCGCGGGGGagaCGGCGGGa -3' miRNA: 3'- -UCGGUgACauGUGUCCCC---GCCGCCCg -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 64700 | 0.67 | 0.595957 |
Target: 5'- aAGCCcucGCUGacguccgagaucUGgGCcgAGGcGGCGGUGGGCa -3' miRNA: 3'- -UCGG---UGAC------------AUgUG--UCC-CCGCCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 65072 | 0.76 | 0.199973 |
Target: 5'- uGCCGCggGUGCACuGGGGCG-UGGGUu -3' miRNA: 3'- uCGGUGa-CAUGUGuCCCCGCcGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 66752 | 0.69 | 0.508859 |
Target: 5'- cGCCAC-GUcCGCcuGGGGuGCGGCGGcGUg -3' miRNA: 3'- uCGGUGaCAuGUG--UCCC-CGCCGCC-CG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 70432 | 0.67 | 0.595957 |
Target: 5'- gGGCUGCUGgUGCACcGcauGGCGGUGGcGCu -3' miRNA: 3'- -UCGGUGAC-AUGUGuCc--CCGCCGCC-CG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 77789 | 0.66 | 0.665266 |
Target: 5'- cGCCGCc---UGCAGGcGCuGGCGGGCa -3' miRNA: 3'- uCGGUGacauGUGUCCcCG-CCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 78055 | 0.67 | 0.609796 |
Target: 5'- cGGCUGCUGcGCAUcgcggAGGGGcUccuggaaauggcccaGGCGGGCg -3' miRNA: 3'- -UCGGUGACaUGUG-----UCCCC-G---------------CCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 79941 | 0.66 | 0.704478 |
Target: 5'- gGGCCcaGCUGgGCugGGcguccGGaGCGGCGGcGCc -3' miRNA: 3'- -UCGG--UGACaUGugUC-----CC-CGCCGCC-CG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 82174 | 0.66 | 0.688874 |
Target: 5'- cGGCCGCgGUuuccgcCGCAGcGGCGGCagugccgccuucuccGGGCc -3' miRNA: 3'- -UCGGUGaCAu-----GUGUCcCCGCCG---------------CCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 84271 | 0.66 | 0.704478 |
Target: 5'- cGCCGgUGUucuGCACgcgcagguAGGGGuuGCaGGGCa -3' miRNA: 3'- uCGGUgACA---UGUG--------UCCCCgcCG-CCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 84709 | 0.68 | 0.541257 |
Target: 5'- cAGCuCGCcGUGCACgcacgcGguguccugcguauguGGGGCGGCGGGg -3' miRNA: 3'- -UCG-GUGaCAUGUG------U---------------CCCCGCCGCCCg -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 85258 | 0.7 | 0.42757 |
Target: 5'- cGGCCGCgcgGggccGCGCgcgaggcuucggGGGGGCGG-GGGCc -3' miRNA: 3'- -UCGGUGa--Ca---UGUG------------UCCCCGCCgCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 85815 | 0.67 | 0.605838 |
Target: 5'- gGGCgAUgacgGggggGgGCGGGGGCGGgCGGGg -3' miRNA: 3'- -UCGgUGa---Ca---UgUGUCCCCGCC-GCCCg -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 85998 | 0.7 | 0.444988 |
Target: 5'- gGGgCGCUG-GCGCAGGGGgGugagccggagacGUGGGCg -3' miRNA: 3'- -UCgGUGACaUGUGUCCCCgC------------CGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 86245 | 0.76 | 0.204835 |
Target: 5'- uGGCCACcGUGCugaagcacggcCGGGGGC-GCGGGCg -3' miRNA: 3'- -UCGGUGaCAUGu----------GUCCCCGcCGCCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 87164 | 0.66 | 0.694741 |
Target: 5'- gGGCUGCUGccccgcgugcaGCGCGGgcgacGGGCGGCuGGCc -3' miRNA: 3'- -UCGGUGACa----------UGUGUC-----CCCGCCGcCCG- -5' |
|||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 88049 | 0.74 | 0.241795 |
Target: 5'- gGGCCGCUGgggGgGCGggcucguccccuGGGGCGGCGGcGUc -3' miRNA: 3'- -UCGGUGACa--UgUGU------------CCCCGCCGCC-CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home