Results 141 - 160 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 105556 | 0.68 | 0.577257 |
Target: 5'- cGCCugUGUucccaaacguccagcGCgucgaaaggguaguACGGGuccauguucgagGGCGGCGGGCg -3' miRNA: 3'- uCGGugACA---------------UG--------------UGUCC------------CCGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 107368 | 0.68 | 0.541257 |
Target: 5'- cGCCAacacgGUGCgguaccugcagcgcgGCGGGaGGUGGCGGGa -3' miRNA: 3'- uCGGUga---CAUG---------------UGUCC-CCGCCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 109358 | 0.69 | 0.499484 |
Target: 5'- uGGCCGgcCUGgcCGCccGGGGaGCaGCGGGCu -3' miRNA: 3'- -UCGGU--GACauGUG--UCCC-CGcCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 110370 | 0.75 | 0.225316 |
Target: 5'- cAGCaGCUGgcC-CAGGGGCcgguGGCGGGCa -3' miRNA: 3'- -UCGgUGACauGuGUCCCCG----CCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 111610 | 0.69 | 0.498551 |
Target: 5'- cGGCCucCUGgagcCcCGGGGGCGGCagacucgcgucggGGGCg -3' miRNA: 3'- -UCGGu-GACau--GuGUCCCCGCCG-------------CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 111815 | 0.68 | 0.537408 |
Target: 5'- cGGUCGCgg-GCGucCAGGGGCuGGCgcgGGGCg -3' miRNA: 3'- -UCGGUGacaUGU--GUCCCCG-CCG---CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 113304 | 0.74 | 0.241795 |
Target: 5'- aAGCCGCUGga-GCuGGuGGCcGCGGGCa -3' miRNA: 3'- -UCGGUGACaugUGuCC-CCGcCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 113464 | 0.69 | 0.522107 |
Target: 5'- cGCCACccguguuuuggggguUGUGCGugauCAuGGGCGGCGcGGCc -3' miRNA: 3'- uCGGUG---------------ACAUGU----GUcCCCGCCGC-CCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 113738 | 0.66 | 0.694741 |
Target: 5'- cGUCGCguucuaACGGGGGUguGGCGGGg -3' miRNA: 3'- uCGGUGacaug-UGUCCCCG--CCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 114473 | 0.69 | 0.480969 |
Target: 5'- aGGCCAUUGcccugcuCACGGGGGaGGCccuggacgggacGGGCa -3' miRNA: 3'- -UCGGUGACau-----GUGUCCCCgCCG------------CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 117482 | 0.66 | 0.704478 |
Target: 5'- cGGCCGCcGUguaccugcgcaACGCGGucGUGGCGGGa -3' miRNA: 3'- -UCGGUGaCA-----------UGUGUCccCGCCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 117687 | 0.7 | 0.436229 |
Target: 5'- cGGCgGCgUGUACGCGGGGGacaaGGaGGGg -3' miRNA: 3'- -UCGgUG-ACAUGUGUCCCCg---CCgCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 120564 | 0.7 | 0.419014 |
Target: 5'- aGGCCGCUGUugGUGGuGGUGGagGGGCg -3' miRNA: 3'- -UCGGUGACAugUGUCcCCGCCg-CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 121289 | 0.7 | 0.436229 |
Target: 5'- cGGCCGCcccgACGguGGGGCGGCcgcgaacuuccGGGUc -3' miRNA: 3'- -UCGGUGaca-UGUguCCCCGCCG-----------CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 122058 | 0.66 | 0.684954 |
Target: 5'- gAGCC-CUGgGCGCgucggacgcggAGGcGGUgcuGGCGGGCc -3' miRNA: 3'- -UCGGuGACaUGUG-----------UCC-CCG---CCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 122801 | 0.72 | 0.362152 |
Target: 5'- uGGCCguGCUG-GCGCAucuGGGCGGCcaGGGCg -3' miRNA: 3'- -UCGG--UGACaUGUGUc--CCCGCCG--CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 124499 | 0.71 | 0.385856 |
Target: 5'- cGCCAUg--GCGgGGGGGgGGCugcGGGCg -3' miRNA: 3'- uCGGUGacaUGUgUCCCCgCCG---CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 125636 | 0.69 | 0.499484 |
Target: 5'- cAGCUGCUGgccaaacauCGCGGGcgaGGCGG-GGGCg -3' miRNA: 3'- -UCGGUGACau-------GUGUCC---CCGCCgCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 125711 | 0.66 | 0.65538 |
Target: 5'- cGGgCGC---GCGCGGGGGCGGCGa-- -3' miRNA: 3'- -UCgGUGacaUGUGUCCCCGCCGCccg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 132135 | 0.78 | 0.141853 |
Target: 5'- cGGCC-CUGcGCcgcCGGGGGcCGGCGGGCg -3' miRNA: 3'- -UCGGuGACaUGu--GUCCCC-GCCGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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