miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 124499 0.71 0.385856
Target:  5'- cGCCAUg--GCGgGGGGGgGGCugcGGGCg -3'
miRNA:   3'- uCGGUGacaUGUgUCCCCgCCG---CCCG- -5'
5245 3' -61.2 NC_001798.1 + 122801 0.72 0.362152
Target:  5'- uGGCCguGCUG-GCGCAucuGGGCGGCcaGGGCg -3'
miRNA:   3'- -UCGG--UGACaUGUGUc--CCCGCCG--CCCG- -5'
5245 3' -61.2 NC_001798.1 + 122058 0.66 0.684954
Target:  5'- gAGCC-CUGgGCGCgucggacgcggAGGcGGUgcuGGCGGGCc -3'
miRNA:   3'- -UCGGuGACaUGUG-----------UCC-CCG---CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 121289 0.7 0.436229
Target:  5'- cGGCCGCcccgACGguGGGGCGGCcgcgaacuuccGGGUc -3'
miRNA:   3'- -UCGGUGaca-UGUguCCCCGCCG-----------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 120564 0.7 0.419014
Target:  5'- aGGCCGCUGUugGUGGuGGUGGagGGGCg -3'
miRNA:   3'- -UCGGUGACAugUGUCcCCGCCg-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 117687 0.7 0.436229
Target:  5'- cGGCgGCgUGUACGCGGGGGacaaGGaGGGg -3'
miRNA:   3'- -UCGgUG-ACAUGUGUCCCCg---CCgCCCg -5'
5245 3' -61.2 NC_001798.1 + 117482 0.66 0.704478
Target:  5'- cGGCCGCcGUguaccugcgcaACGCGGucGUGGCGGGa -3'
miRNA:   3'- -UCGGUGaCA-----------UGUGUCccCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 114473 0.69 0.480969
Target:  5'- aGGCCAUUGcccugcuCACGGGGGaGGCccuggacgggacGGGCa -3'
miRNA:   3'- -UCGGUGACau-----GUGUCCCCgCCG------------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 113738 0.66 0.694741
Target:  5'- cGUCGCguucuaACGGGGGUguGGCGGGg -3'
miRNA:   3'- uCGGUGacaug-UGUCCCCG--CCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 113464 0.69 0.522107
Target:  5'- cGCCACccguguuuuggggguUGUGCGugauCAuGGGCGGCGcGGCc -3'
miRNA:   3'- uCGGUG---------------ACAUGU----GUcCCCGCCGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 113304 0.74 0.241795
Target:  5'- aAGCCGCUGga-GCuGGuGGCcGCGGGCa -3'
miRNA:   3'- -UCGGUGACaugUGuCC-CCGcCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 111815 0.68 0.537408
Target:  5'- cGGUCGCgg-GCGucCAGGGGCuGGCgcgGGGCg -3'
miRNA:   3'- -UCGGUGacaUGU--GUCCCCG-CCG---CCCG- -5'
5245 3' -61.2 NC_001798.1 + 111610 0.69 0.498551
Target:  5'- cGGCCucCUGgagcCcCGGGGGCGGCagacucgcgucggGGGCg -3'
miRNA:   3'- -UCGGu-GACau--GuGUCCCCGCCG-------------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 110370 0.75 0.225316
Target:  5'- cAGCaGCUGgcC-CAGGGGCcgguGGCGGGCa -3'
miRNA:   3'- -UCGgUGACauGuGUCCCCG----CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 109358 0.69 0.499484
Target:  5'- uGGCCGgcCUGgcCGCccGGGGaGCaGCGGGCu -3'
miRNA:   3'- -UCGGU--GACauGUG--UCCC-CGcCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 107368 0.68 0.541257
Target:  5'- cGCCAacacgGUGCgguaccugcagcgcgGCGGGaGGUGGCGGGa -3'
miRNA:   3'- uCGGUga---CAUG---------------UGUCC-CCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 105556 0.68 0.577257
Target:  5'- cGCCugUGUucccaaacguccagcGCgucgaaaggguaguACGGGuccauguucgagGGCGGCGGGCg -3'
miRNA:   3'- uCGGugACA---------------UG--------------UGUCC------------CCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 105187 0.67 0.635564
Target:  5'- -uCCGCg--GCgGCGGGGcccGCGGUGGGCg -3'
miRNA:   3'- ucGGUGacaUG-UGUCCC---CGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 104501 0.68 0.555773
Target:  5'- uGGCCGC-GUgccaaaaACGCGGcGGCGGCGcGGUu -3'
miRNA:   3'- -UCGGUGaCA-------UGUGUCcCCGCCGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 103165 0.8 0.099579
Target:  5'- gGGCCAC-GUGCgcaaACAGGGuGCGGuCGGGCg -3'
miRNA:   3'- -UCGGUGaCAUG----UGUCCC-CGCC-GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.