miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 102550 0.72 0.346921
Target:  5'- aGGCCGCacgcgGUcaGCGGcGGGUGGCGGGg -3'
miRNA:   3'- -UCGGUGa----CAugUGUC-CCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 102465 0.66 0.704478
Target:  5'- cGGgUACggGUGgGCGGGaGGaGGCGGGUa -3'
miRNA:   3'- -UCgGUGa-CAUgUGUCC-CCgCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 101859 0.7 0.436229
Target:  5'- cGGCgGCg--GCGgAGGGG-GGUGGGCg -3'
miRNA:   3'- -UCGgUGacaUGUgUCCCCgCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 100347 0.66 0.645477
Target:  5'- gGGcCCGCUG-AUcgAGGGGCaGCuGGGCg -3'
miRNA:   3'- -UC-GGUGACaUGugUCCCCGcCG-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 98906 0.66 0.665266
Target:  5'- cGCCGCUGcccgACGCgcccggAGGGGCagaacuacacGGaGGGCa -3'
miRNA:   3'- uCGGUGACa---UGUG------UCCCCG----------CCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 97593 0.7 0.444988
Target:  5'- gAGCCAg-GgGCGCAGGGGCcGGagagcugGGGCg -3'
miRNA:   3'- -UCGGUgaCaUGUGUCCCCG-CCg------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 97455 0.72 0.339479
Target:  5'- cGCCGCgUGcugGCGCggcuGGGGGcCGGCGGcGCg -3'
miRNA:   3'- uCGGUG-ACa--UGUG----UCCCC-GCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 97228 0.76 0.204835
Target:  5'- uGGCCguggaGCUG-GCGCuguucGGGCGGCGGGCg -3'
miRNA:   3'- -UCGG-----UGACaUGUGuc---CCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 96966 0.74 0.265316
Target:  5'- cAGgCGCUGgcgcggacCGCGGcGGGCGGCGGGg -3'
miRNA:   3'- -UCgGUGACau------GUGUC-CCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 96018 0.7 0.419014
Target:  5'- -aUCACg--GCACAccggcGGGGCgGGCGGGCg -3'
miRNA:   3'- ucGGUGacaUGUGU-----CCCCG-CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 95683 0.73 0.310878
Target:  5'- uGGCgGCg--GCgGCGGGGGCGGCcGGCg -3'
miRNA:   3'- -UCGgUGacaUG-UGUCCCCGCCGcCCG- -5'
5245 3' -61.2 NC_001798.1 + 95298 0.68 0.556744
Target:  5'- gGGUUugUGUGCGCGGcgucgagucucGGG-GGCGGGg -3'
miRNA:   3'- -UCGGugACAUGUGUC-----------CCCgCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 94993 0.69 0.471838
Target:  5'- cGGCCGcCUGggcccCGCA-GGGCGGCgcGGGCc -3'
miRNA:   3'- -UCGGU-GACau---GUGUcCCCGCCG--CCCG- -5'
5245 3' -61.2 NC_001798.1 + 91781 0.67 0.605838
Target:  5'- cGGCCACgcccccugccgaUG-ACGCGcGGGGCGuggggaccGUGGGCg -3'
miRNA:   3'- -UCGGUG------------ACaUGUGU-CCCCGC--------CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 91558 0.69 0.47093
Target:  5'- gAGCCAgUGUGuggugucCGCGGGGGCGcCGcGGUu -3'
miRNA:   3'- -UCGGUgACAU-------GUGUCCCCGCcGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 91284 0.67 0.615737
Target:  5'- uGCCGuCUGggugGCucccCGGGGGUuguGGgGGGCa -3'
miRNA:   3'- uCGGU-GACa---UGu---GUCCCCG---CCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 91065 0.66 0.675126
Target:  5'- -cCCGCaGUACACcuuAGGGGCGcGCcggaGGCg -3'
miRNA:   3'- ucGGUGaCAUGUG---UCCCCGC-CGc---CCG- -5'
5245 3' -61.2 NC_001798.1 + 88049 0.74 0.241795
Target:  5'- gGGCCGCUGgggGgGCGggcucguccccuGGGGCGGCGGcGUc -3'
miRNA:   3'- -UCGGUGACa--UgUGU------------CCCCGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 87164 0.66 0.694741
Target:  5'- gGGCUGCUGccccgcgugcaGCGCGGgcgacGGGCGGCuGGCc -3'
miRNA:   3'- -UCGGUGACa----------UGUGUC-----CCCGCCGcCCG- -5'
5245 3' -61.2 NC_001798.1 + 86245 0.76 0.204835
Target:  5'- uGGCCACcGUGCugaagcacggcCGGGGGC-GCGGGCg -3'
miRNA:   3'- -UCGGUGaCAUGu----------GUCCCCGcCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.