miRNA display CGI


Results 81 - 100 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 85998 0.7 0.444988
Target:  5'- gGGgCGCUG-GCGCAGGGGgGugagccggagacGUGGGCg -3'
miRNA:   3'- -UCgGUGACaUGUGUCCCCgC------------CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 85815 0.67 0.605838
Target:  5'- gGGCgAUgacgGggggGgGCGGGGGCGGgCGGGg -3'
miRNA:   3'- -UCGgUGa---Ca---UgUGUCCCCGCC-GCCCg -5'
5245 3' -61.2 NC_001798.1 + 85258 0.7 0.42757
Target:  5'- cGGCCGCgcgGggccGCGCgcgaggcuucggGGGGGCGG-GGGCc -3'
miRNA:   3'- -UCGGUGa--Ca---UGUG------------UCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 84709 0.68 0.541257
Target:  5'- cAGCuCGCcGUGCACgcacgcGguguccugcguauguGGGGCGGCGGGg -3'
miRNA:   3'- -UCG-GUGaCAUGUG------U---------------CCCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 84271 0.66 0.704478
Target:  5'- cGCCGgUGUucuGCACgcgcagguAGGGGuuGCaGGGCa -3'
miRNA:   3'- uCGGUgACA---UGUG--------UCCCCgcCG-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 82174 0.66 0.688874
Target:  5'- cGGCCGCgGUuuccgcCGCAGcGGCGGCagugccgccuucuccGGGCc -3'
miRNA:   3'- -UCGGUGaCAu-----GUGUCcCCGCCG---------------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 79941 0.66 0.704478
Target:  5'- gGGCCcaGCUGgGCugGGcguccGGaGCGGCGGcGCc -3'
miRNA:   3'- -UCGG--UGACaUGugUC-----CC-CGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 78055 0.67 0.609796
Target:  5'- cGGCUGCUGcGCAUcgcggAGGGGcUccuggaaauggcccaGGCGGGCg -3'
miRNA:   3'- -UCGGUGACaUGUG-----UCCCC-G---------------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 77789 0.66 0.665266
Target:  5'- cGCCGCc---UGCAGGcGCuGGCGGGCa -3'
miRNA:   3'- uCGGUGacauGUGUCCcCG-CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 70432 0.67 0.595957
Target:  5'- gGGCUGCUGgUGCACcGcauGGCGGUGGcGCu -3'
miRNA:   3'- -UCGGUGAC-AUGUGuCc--CCGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 66752 0.69 0.508859
Target:  5'- cGCCAC-GUcCGCcuGGGGuGCGGCGGcGUg -3'
miRNA:   3'- uCGGUGaCAuGUG--UCCC-CGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 65072 0.76 0.199973
Target:  5'- uGCCGCggGUGCACuGGGGCG-UGGGUu -3'
miRNA:   3'- uCGGUGa-CAUGUGuCCCCGCcGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 64700 0.67 0.595957
Target:  5'- aAGCCcucGCUGacguccgagaucUGgGCcgAGGcGGCGGUGGGCa -3'
miRNA:   3'- -UCGG---UGAC------------AUgUG--UCC-CCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 64144 0.68 0.556744
Target:  5'- gGGUCGgUGcuCGCGGGGGagaCGGCGGGa -3'
miRNA:   3'- -UCGGUgACauGUGUCCCC---GCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 63245 0.71 0.385856
Target:  5'- aGGCUgaggggaaaGCUG-GCGuCGGGGGCGG-GGGCg -3'
miRNA:   3'- -UCGG---------UGACaUGU-GUCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 61313 1.1 0.000756
Target:  5'- cAGCCACUGUACACAGGGGCGGCGGGCu -3'
miRNA:   3'- -UCGGUGACAUGUGUCCCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 59669 0.79 0.116007
Target:  5'- gGGCgACUcGgcuCGCguGGGGGCGGCGGGCa -3'
miRNA:   3'- -UCGgUGA-Cau-GUG--UCCCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 58986 0.68 0.556744
Target:  5'- cGGCCggGCga-ACGCGGGGGgGGCGcGGa -3'
miRNA:   3'- -UCGG--UGacaUGUGUCCCCgCCGC-CCg -5'
5245 3' -61.2 NC_001798.1 + 58687 0.67 0.586101
Target:  5'- cGCCGCcGU---CAGGGccGCGGCGGcGCg -3'
miRNA:   3'- uCGGUGaCAuguGUCCC--CGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 56158 0.68 0.556744
Target:  5'- cGGCgGCUuauaACGCccGGGGGaCGGCGGGg -3'
miRNA:   3'- -UCGgUGAca--UGUG--UCCCC-GCCGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.