Results 121 - 140 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 36142 | 0.7 | 0.462795 |
Target: 5'- cGCCGgUGggGCGCGGcGGCGGuCGGGg -3' miRNA: 3'- uCGGUgACa-UGUGUCcCCGCC-GCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 36072 | 0.73 | 0.304021 |
Target: 5'- aGGCUGCgg-GCGCGGGGuaGGUGGGUg -3' miRNA: 3'- -UCGGUGacaUGUGUCCCcgCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 36025 | 0.71 | 0.410563 |
Target: 5'- cGCCuugGCUGU-UugGGGGGUGGCGG-Cg -3' miRNA: 3'- uCGG---UGACAuGugUCCCCGCCGCCcG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 35777 | 0.69 | 0.499484 |
Target: 5'- cGGCUGCgGUGCuuGGgucuccuucgucGGGCGGCGGGg -3' miRNA: 3'- -UCGGUGaCAUGugUC------------CCCGCCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 35500 | 0.69 | 0.488336 |
Target: 5'- cGGCCACguaaacaaugACACAGGGGUucucuccgccgcGGCcGGCg -3' miRNA: 3'- -UCGGUGaca-------UGUGUCCCCG------------CCGcCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 35404 | 0.7 | 0.418164 |
Target: 5'- cGGCCGCcGgaugccCGCGGGGGCcuaaugcGGCGGGa -3' miRNA: 3'- -UCGGUGaCau----GUGUCCCCG-------CCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 34975 | 0.67 | 0.615737 |
Target: 5'- cGGCCGCcgagGU--GCGGGGGCcccuccGGCcgGGGCg -3' miRNA: 3'- -UCGGUGa---CAugUGUCCCCG------CCG--CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 34624 | 0.66 | 0.704478 |
Target: 5'- cGGCgGCg--GCGgGGGGGgGGgGGGg -3' miRNA: 3'- -UCGgUGacaUGUgUCCCCgCCgCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 34095 | 0.75 | 0.225316 |
Target: 5'- gGGUgACcg-GCGCguGGGGGCGGUGGGCg -3' miRNA: 3'- -UCGgUGacaUGUG--UCCCCGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 33372 | 0.69 | 0.508859 |
Target: 5'- cGGCCAg---ACcCuGGGGGUGGUGGGCa -3' miRNA: 3'- -UCGGUgacaUGuG-UCCCCGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 31853 | 0.67 | 0.635564 |
Target: 5'- uGCCGCcccccACGCcgcggaGGGGGCGGCGGcccGCc -3' miRNA: 3'- uCGGUGaca--UGUG------UCCCCGCCGCC---CG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 31336 | 0.72 | 0.324945 |
Target: 5'- cGGCCgGCggggGgcgcGCGCAGGcGCGGCGGGUg -3' miRNA: 3'- -UCGG-UGa---Ca---UGUGUCCcCGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 31141 | 0.81 | 0.097064 |
Target: 5'- cGCCcCg--GCGCGGGGGCGGCGGuGCg -3' miRNA: 3'- uCGGuGacaUGUGUCCCCGCCGCC-CG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 30922 | 0.7 | 0.419014 |
Target: 5'- uGGCCGacgGUGagggcgGCGGGGGUcgggcggggGGCGGGCg -3' miRNA: 3'- -UCGGUga-CAUg-----UGUCCCCG---------CCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 29896 | 0.7 | 0.444107 |
Target: 5'- cGGCUGCggGUugGgGGuggucgcGGGCGGUGGGCu -3' miRNA: 3'- -UCGGUGa-CAugUgUC-------CCCGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 29399 | 0.66 | 0.688874 |
Target: 5'- gGGCCGCgccgGcgggGCGcCGGGGGgacucccaucugcguCGGCGGGg -3' miRNA: 3'- -UCGGUGa---Ca---UGU-GUCCCC---------------GCCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 28972 | 0.69 | 0.499484 |
Target: 5'- cGCCGCUccgccCGCcccaGGGGGCGGCGccGGCc -3' miRNA: 3'- uCGGUGAcau--GUG----UCCCCGCCGC--CCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 27537 | 0.66 | 0.645477 |
Target: 5'- cAGCCccGCgGcGCGCGGGGGgaggGGCGGcGCc -3' miRNA: 3'- -UCGG--UGaCaUGUGUCCCCg---CCGCC-CG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 27509 | 0.67 | 0.625648 |
Target: 5'- aAGCC-----GCGCGGGGGCGcccGCGGGa -3' miRNA: 3'- -UCGGugacaUGUGUCCCCGC---CGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 27477 | 0.69 | 0.471838 |
Target: 5'- cGUC-CUGccGCGCGGGGGCGggcGCGGGa -3' miRNA: 3'- uCGGuGACa-UGUGUCCCCGC---CGCCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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