miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 102465 0.66 0.704478
Target:  5'- cGGgUACggGUGgGCGGGaGGaGGCGGGUa -3'
miRNA:   3'- -UCgGUGa-CAUgUGUCC-CCgCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 53633 0.66 0.704478
Target:  5'- cGCCGCggccaaGUACGCcgccGcGGUGGCGGGg -3'
miRNA:   3'- uCGGUGa-----CAUGUGu---CcCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 79941 0.66 0.704478
Target:  5'- gGGCCcaGCUGgGCugGGcguccGGaGCGGCGGcGCc -3'
miRNA:   3'- -UCGG--UGACaUGugUC-----CC-CGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 84271 0.66 0.704478
Target:  5'- cGCCGgUGUucuGCACgcgcagguAGGGGuuGCaGGGCa -3'
miRNA:   3'- uCGGUgACA---UGUG--------UCCCCgcCG-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 34624 0.66 0.704478
Target:  5'- cGGCgGCg--GCGgGGGGGgGGgGGGg -3'
miRNA:   3'- -UCGgUGacaUGUgUCCCCgCCgCCCg -5'
5245 3' -61.2 NC_001798.1 + 29399 0.66 0.688874
Target:  5'- gGGCCGCgccgGcgggGCGcCGGGGGgacucccaucugcguCGGCGGGg -3'
miRNA:   3'- -UCGGUGa---Ca---UGU-GUCCCC---------------GCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 82174 0.66 0.688874
Target:  5'- cGGCCGCgGUuuccgcCGCAGcGGCGGCagugccgccuucuccGGGCc -3'
miRNA:   3'- -UCGGUGaCAu-----GUGUCcCCGCCG---------------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 153498 0.66 0.665266
Target:  5'- aAGCaCAcCUGcgggcggggagACACGGGGGuCGGagGGGCg -3'
miRNA:   3'- -UCG-GU-GACa----------UGUGUCCCC-GCCg-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 15331 0.66 0.665266
Target:  5'- gGGCCcCg--GCGCGGuaGCGGgGGGCg -3'
miRNA:   3'- -UCGGuGacaUGUGUCccCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 98906 0.66 0.665266
Target:  5'- cGCCGCUGcccgACGCgcccggAGGGGCagaacuacacGGaGGGCa -3'
miRNA:   3'- uCGGUGACa---UGUG------UCCCCG----------CCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 27213 0.66 0.665266
Target:  5'- aAGCCcccgggGCgggGCGCGGGGGaGGCGGccGCg -3'
miRNA:   3'- -UCGG------UGacaUGUGUCCCCgCCGCC--CG- -5'
5245 3' -61.2 NC_001798.1 + 154082 0.66 0.665266
Target:  5'- cGGCacgGCUGgaGCGcCGGGGcGCGGCcGGCg -3'
miRNA:   3'- -UCGg--UGACa-UGU-GUCCC-CGCCGcCCG- -5'
5245 3' -61.2 NC_001798.1 + 147170 0.66 0.675126
Target:  5'- uAGCCGCccgGCGCc-GGGCGGaaGGCg -3'
miRNA:   3'- -UCGGUGacaUGUGucCCCGCCgcCCG- -5'
5245 3' -61.2 NC_001798.1 + 21727 0.66 0.675126
Target:  5'- cAGCCGgUGUGCcCcuGGuGCGGCGG-Cg -3'
miRNA:   3'- -UCGGUgACAUGuGucCC-CGCCGCCcG- -5'
5245 3' -61.2 NC_001798.1 + 91065 0.66 0.675126
Target:  5'- -cCCGCaGUACACcuuAGGGGCGcGCcggaGGCg -3'
miRNA:   3'- ucGGUGaCAUGUG---UCCCCGC-CGc---CCG- -5'
5245 3' -61.2 NC_001798.1 + 148419 0.66 0.684954
Target:  5'- uGGgCGCcg-GgGCGGGGGUGGgcaCGGGCg -3'
miRNA:   3'- -UCgGUGacaUgUGUCCCCGCC---GCCCG- -5'
5245 3' -61.2 NC_001798.1 + 45244 0.66 0.684954
Target:  5'- uGGCCACcauccugcagaUGUACAUgucgguGGGGGCcGCGGa- -3'
miRNA:   3'- -UCGGUG-----------ACAUGUG------UCCCCGcCGCCcg -5'
5245 3' -61.2 NC_001798.1 + 122058 0.66 0.684954
Target:  5'- gAGCC-CUGgGCGCgucggacgcggAGGcGGUgcuGGCGGGCc -3'
miRNA:   3'- -UCGGuGACaUGUG-----------UCC-CCG---CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26357 0.66 0.684954
Target:  5'- cGGCCcgGCggagcUGCGCGGGccGCGGCGGGa -3'
miRNA:   3'- -UCGG--UGac---AUGUGUCCc-CGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 147220 0.66 0.684954
Target:  5'- gGGCCcccgGCgGaGCGCGGGGGCcccggGGCcccGGGCc -3'
miRNA:   3'- -UCGG----UGaCaUGUGUCCCCG-----CCG---CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.