miRNA display CGI


Results 81 - 100 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 2569 0.67 0.635564
Target:  5'- cGGCCGC--------GGGGCGGgGGGCg -3'
miRNA:   3'- -UCGGUGacauguguCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 31853 0.67 0.635564
Target:  5'- uGCCGCcccccACGCcgcggaGGGGGCGGCGGcccGCc -3'
miRNA:   3'- uCGGUGaca--UGUG------UCCCCGCCGCC---CG- -5'
5245 3' -61.2 NC_001798.1 + 27509 0.67 0.625648
Target:  5'- aAGCC-----GCGCGGGGGCGcccGCGGGa -3'
miRNA:   3'- -UCGGugacaUGUGUCCCCGC---CGCCCg -5'
5245 3' -61.2 NC_001798.1 + 38186 0.67 0.625648
Target:  5'- gGGCCGCUGgucgaGCAGGaGGC-GCGGa- -3'
miRNA:   3'- -UCGGUGACaug--UGUCC-CCGcCGCCcg -5'
5245 3' -61.2 NC_001798.1 + 134208 0.67 0.615737
Target:  5'- -cCCGCUGgagcccCugGGGGacccgacccuGUGGCGGGCg -3'
miRNA:   3'- ucGGUGACau----GugUCCC----------CGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 36493 0.67 0.615737
Target:  5'- cGCCgGCgcgACGCGGGcGGCcgGGCGGGg -3'
miRNA:   3'- uCGG-UGacaUGUGUCC-CCG--CCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 34975 0.67 0.615737
Target:  5'- cGGCCGCcgagGU--GCGGGGGCcccuccGGCcgGGGCg -3'
miRNA:   3'- -UCGGUGa---CAugUGUCCCCG------CCG--CCCG- -5'
5245 3' -61.2 NC_001798.1 + 27537 0.66 0.645477
Target:  5'- cAGCCccGCgGcGCGCGGGGGgaggGGCGGcGCc -3'
miRNA:   3'- -UCGG--UGaCaUGUGUCCCCg---CCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 42748 0.66 0.645477
Target:  5'- cGUCGCcc-GCACAGacGGGCGGCGcGCg -3'
miRNA:   3'- uCGGUGacaUGUGUC--CCCGCCGCcCG- -5'
5245 3' -61.2 NC_001798.1 + 100347 0.66 0.645477
Target:  5'- gGGcCCGCUG-AUcgAGGGGCaGCuGGGCg -3'
miRNA:   3'- -UC-GGUGACaUGugUCCCCGcCG-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 98906 0.66 0.665266
Target:  5'- cGCCGCUGcccgACGCgcccggAGGGGCagaacuacacGGaGGGCa -3'
miRNA:   3'- uCGGUGACa---UGUG------UCCCCG----------CCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 15331 0.66 0.665266
Target:  5'- gGGCCcCg--GCGCGGuaGCGGgGGGCg -3'
miRNA:   3'- -UCGGuGacaUGUGUCccCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 153498 0.66 0.665266
Target:  5'- aAGCaCAcCUGcgggcggggagACACGGGGGuCGGagGGGCg -3'
miRNA:   3'- -UCG-GU-GACa----------UGUGUCCCC-GCCg-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 77789 0.66 0.665266
Target:  5'- cGCCGCc---UGCAGGcGCuGGCGGGCa -3'
miRNA:   3'- uCGGUGacauGUGUCCcCG-CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 15860 0.66 0.664278
Target:  5'- gGGUCGacccccucgggguCUGUcCGCAGGGcGCGucgaaaccGCGGGCg -3'
miRNA:   3'- -UCGGU-------------GACAuGUGUCCC-CGC--------CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 125711 0.66 0.65538
Target:  5'- cGGgCGC---GCGCGGGGGCGGCGa-- -3'
miRNA:   3'- -UCgGUGacaUGUGUCCCCGCCGCccg -5'
5245 3' -61.2 NC_001798.1 + 3412 0.66 0.65538
Target:  5'- cGCCGC-GUucucgcgcGCcaGCAGGGGCgcguaGGCGcGGCg -3'
miRNA:   3'- uCGGUGaCA--------UG--UGUCCCCG-----CCGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 1813 0.66 0.65538
Target:  5'- uGCCGCgagacCACGGGcccGuCGGCGGGCc -3'
miRNA:   3'- uCGGUGacau-GUGUCCc--C-GCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 134267 0.66 0.645477
Target:  5'- cGGCC-CUGgaGCGcCAGacGGGcCGGUGGGCc -3'
miRNA:   3'- -UCGGuGACa-UGU-GUC--CCC-GCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 149388 0.66 0.645477
Target:  5'- -uCCACUccgACGCgGGGGGCGuCGGGUa -3'
miRNA:   3'- ucGGUGAca-UGUG-UCCCCGCcGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.