miRNA display CGI


Results 101 - 120 of 197 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 4037 0.67 0.605838
Target:  5'- cGGCCACcGccGCGCGGGccCGGCGGcGCu -3'
miRNA:   3'- -UCGGUGaCa-UGUGUCCccGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 8551 0.67 0.605838
Target:  5'- gGGUCGCg--GCG-AGGGGUGG-GGGCg -3'
miRNA:   3'- -UCGGUGacaUGUgUCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 85815 0.67 0.605838
Target:  5'- gGGCgAUgacgGggggGgGCGGGGGCGGgCGGGg -3'
miRNA:   3'- -UCGgUGa---Ca---UgUGUCCCCGCC-GCCCg -5'
5245 3' -61.2 NC_001798.1 + 52607 0.67 0.604849
Target:  5'- uGGCCGCguUugACGGcGGGUcgacggcccccgaGGUGGGCa -3'
miRNA:   3'- -UCGGUGacAugUGUC-CCCG-------------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 136587 0.67 0.595957
Target:  5'- aGGCCACacaGUcCguGCGGGGGaCGGgccCGGGCa -3'
miRNA:   3'- -UCGGUGa--CAuG--UGUCCCC-GCC---GCCCG- -5'
5245 3' -61.2 NC_001798.1 + 38186 0.67 0.625648
Target:  5'- gGGCCGCUGgucgaGCAGGaGGC-GCGGa- -3'
miRNA:   3'- -UCGGUGACaug--UGUCC-CCGcCGCCcg -5'
5245 3' -61.2 NC_001798.1 + 27509 0.67 0.625648
Target:  5'- aAGCC-----GCGCGGGGGCGcccGCGGGa -3'
miRNA:   3'- -UCGGugacaUGUGUCCCCGC---CGCCCg -5'
5245 3' -61.2 NC_001798.1 + 125711 0.66 0.65538
Target:  5'- cGGgCGC---GCGCGGGGGCGGCGa-- -3'
miRNA:   3'- -UCgGUGacaUGUGUCCCCGCCGCccg -5'
5245 3' -61.2 NC_001798.1 + 3412 0.66 0.65538
Target:  5'- cGCCGC-GUucucgcgcGCcaGCAGGGGCgcguaGGCGcGGCg -3'
miRNA:   3'- uCGGUGaCA--------UG--UGUCCCCG-----CCGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 1813 0.66 0.65538
Target:  5'- uGCCGCgagacCACGGGcccGuCGGCGGGCc -3'
miRNA:   3'- uCGGUGacau-GUGUCCc--C-GCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 134267 0.66 0.645477
Target:  5'- cGGCC-CUGgaGCGcCAGacGGGcCGGUGGGCc -3'
miRNA:   3'- -UCGGuGACa-UGU-GUC--CCC-GCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 149388 0.66 0.645477
Target:  5'- -uCCACUccgACGCgGGGGGCGuCGGGUa -3'
miRNA:   3'- ucGGUGAca-UGUG-UCCCCGCcGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 100347 0.66 0.645477
Target:  5'- gGGcCCGCUG-AUcgAGGGGCaGCuGGGCg -3'
miRNA:   3'- -UC-GGUGACaUGugUCCCCGcCG-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 42748 0.66 0.645477
Target:  5'- cGUCGCcc-GCACAGacGGGCGGCGcGCg -3'
miRNA:   3'- uCGGUGacaUGUGUC--CCCGCCGCcCG- -5'
5245 3' -61.2 NC_001798.1 + 27537 0.66 0.645477
Target:  5'- cAGCCccGCgGcGCGCGGGGGgaggGGCGGcGCc -3'
miRNA:   3'- -UCGG--UGaCaUGUGUCCCCg---CCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 105187 0.67 0.635564
Target:  5'- -uCCGCg--GCgGCGGGGcccGCGGUGGGCg -3'
miRNA:   3'- ucGGUGacaUG-UGUCCC---CGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 36407 0.67 0.635564
Target:  5'- gGGCCcccCUGccGgGC-GGGGCGGUGGGg -3'
miRNA:   3'- -UCGGu--GACa-UgUGuCCCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 152998 0.67 0.635564
Target:  5'- aAGCCG----GCGC-GGGGCGGUcgccgGGGCg -3'
miRNA:   3'- -UCGGUgacaUGUGuCCCCGCCG-----CCCG- -5'
5245 3' -61.2 NC_001798.1 + 2569 0.67 0.635564
Target:  5'- cGGCCGC--------GGGGCGGgGGGCg -3'
miRNA:   3'- -UCGGUGacauguguCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 31853 0.67 0.635564
Target:  5'- uGCCGCcccccACGCcgcggaGGGGGCGGCGGcccGCc -3'
miRNA:   3'- uCGGUGaca--UGUG------UCCCCGCCGCC---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.