Results 121 - 140 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 5229 | 0.68 | 0.580202 |
Target: 5'- cGCCugGCUGauauaguccucgggGCGCGcGGGGCGGgGGGa -3' miRNA: 3'- uCGG--UGACa-------------UGUGU-CCCCGCCgCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 105556 | 0.68 | 0.577257 |
Target: 5'- cGCCugUGUucccaaacguccagcGCgucgaaaggguaguACGGGuccauguucgagGGCGGCGGGCg -3' miRNA: 3'- uCGGugACA---------------UG--------------UGUCC------------CCGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 91781 | 0.67 | 0.605838 |
Target: 5'- cGGCCACgcccccugccgaUG-ACGCGcGGGGCGuggggaccGUGGGCg -3' miRNA: 3'- -UCGGUG------------ACaUGUGU-CCCCGC--------CGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 78055 | 0.67 | 0.609796 |
Target: 5'- cGGCUGCUGcGCAUcgcggAGGGGcUccuggaaauggcccaGGCGGGCg -3' miRNA: 3'- -UCGGUGACaUGUG-----UCCCC-G---------------CCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 149170 | 0.67 | 0.612766 |
Target: 5'- cGGCCGgUGguccggugGGGGGCGGCuuccuucGGGCa -3' miRNA: 3'- -UCGGUgACaugug---UCCCCGCCG-------CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 100347 | 0.66 | 0.645477 |
Target: 5'- gGGcCCGCUG-AUcgAGGGGCaGCuGGGCg -3' miRNA: 3'- -UC-GGUGACaUGugUCCCCGcCG-CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 42748 | 0.66 | 0.645477 |
Target: 5'- cGUCGCcc-GCACAGacGGGCGGCGcGCg -3' miRNA: 3'- uCGGUGacaUGUGUC--CCCGCCGCcCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 27537 | 0.66 | 0.645477 |
Target: 5'- cAGCCccGCgGcGCGCGGGGGgaggGGCGGcGCc -3' miRNA: 3'- -UCGG--UGaCaUGUGUCCCCg---CCGCC-CG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 105187 | 0.67 | 0.635564 |
Target: 5'- -uCCGCg--GCgGCGGGGcccGCGGUGGGCg -3' miRNA: 3'- ucGGUGacaUG-UGUCCC---CGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 36407 | 0.67 | 0.635564 |
Target: 5'- gGGCCcccCUGccGgGC-GGGGCGGUGGGg -3' miRNA: 3'- -UCGGu--GACa-UgUGuCCCCGCCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 152998 | 0.67 | 0.635564 |
Target: 5'- aAGCCG----GCGC-GGGGCGGUcgccgGGGCg -3' miRNA: 3'- -UCGGUgacaUGUGuCCCCGCCG-----CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 2569 | 0.67 | 0.635564 |
Target: 5'- cGGCCGC--------GGGGCGGgGGGCg -3' miRNA: 3'- -UCGGUGacauguguCCCCGCCgCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 31853 | 0.67 | 0.635564 |
Target: 5'- uGCCGCcccccACGCcgcggaGGGGGCGGCGGcccGCc -3' miRNA: 3'- uCGGUGaca--UGUG------UCCCCGCCGCC---CG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 27509 | 0.67 | 0.625648 |
Target: 5'- aAGCC-----GCGCGGGGGCGcccGCGGGa -3' miRNA: 3'- -UCGGugacaUGUGUCCCCGC---CGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 38186 | 0.67 | 0.625648 |
Target: 5'- gGGCCGCUGgucgaGCAGGaGGC-GCGGa- -3' miRNA: 3'- -UCGGUGACaug--UGUCC-CCGcCGCCcg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 134208 | 0.67 | 0.615737 |
Target: 5'- -cCCGCUGgagcccCugGGGGacccgacccuGUGGCGGGCg -3' miRNA: 3'- ucGGUGACau----GugUCCC----------CGCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 36493 | 0.67 | 0.615737 |
Target: 5'- cGCCgGCgcgACGCGGGcGGCcgGGCGGGg -3' miRNA: 3'- uCGG-UGacaUGUGUCC-CCG--CCGCCCg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 34975 | 0.67 | 0.615737 |
Target: 5'- cGGCCGCcgagGU--GCGGGGGCcccuccGGCcgGGGCg -3' miRNA: 3'- -UCGGUGa---CAugUGUCCCCG------CCG--CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 91284 | 0.67 | 0.615737 |
Target: 5'- uGCCGuCUGggugGCucccCGGGGGUuguGGgGGGCa -3' miRNA: 3'- uCGGU-GACa---UGu---GUCCCCG---CCgCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 23993 | 0.67 | 0.615737 |
Target: 5'- cGGCUGCUGUACACGccggacgcGGaGGCGaUGGGg -3' miRNA: 3'- -UCGGUGACAUGUGU--------CC-CCGCcGCCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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