miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 5' -52.9 NC_001798.1 + 97677 0.66 0.979334
Target:  5'- gCGGACCGcCugACCaa-GCGGUcgCUGg -3'
miRNA:   3'- -GCCUGGCaGugUGGauaUGUCGa-GAC- -5'
5245 5' -52.9 NC_001798.1 + 68320 0.66 0.976967
Target:  5'- gGGGCUGUCgucuggcaugACACC----CAGCUCUGc -3'
miRNA:   3'- gCCUGGCAG----------UGUGGauauGUCGAGAC- -5'
5245 5' -52.9 NC_001798.1 + 143299 0.66 0.974406
Target:  5'- gGGGCCGUC-CGCCcccgGCGGgUCg- -3'
miRNA:   3'- gCCUGGCAGuGUGGaua-UGUCgAGac -5'
5245 5' -52.9 NC_001798.1 + 147064 0.66 0.968673
Target:  5'- gGGGCCccCGCACCUcgGCGGC-Cg- -3'
miRNA:   3'- gCCUGGcaGUGUGGAuaUGUCGaGac -5'
5245 5' -52.9 NC_001798.1 + 49643 0.66 0.968673
Target:  5'- uGGGCCGcgUACGCCgagcagaugAUGCGGCccgaUCUGu -3'
miRNA:   3'- gCCUGGCa-GUGUGGa--------UAUGUCG----AGAC- -5'
5245 5' -52.9 NC_001798.1 + 132563 0.67 0.965488
Target:  5'- uCGGAgcCCGUCuuuACGCCcAUGCuGCUCa- -3'
miRNA:   3'- -GCCU--GGCAG---UGUGGaUAUGuCGAGac -5'
5245 5' -52.9 NC_001798.1 + 141329 0.67 0.962082
Target:  5'- cCGcGGCCGUcCACGCCcaguUugGGCUcCUGa -3'
miRNA:   3'- -GC-CUGGCA-GUGUGGau--AugUCGA-GAC- -5'
5245 5' -52.9 NC_001798.1 + 45371 0.67 0.962082
Target:  5'- gCGGGCCcuugGUCucucCACCU---CGGCUCUGg -3'
miRNA:   3'- -GCCUGG----CAGu---GUGGAuauGUCGAGAC- -5'
5245 5' -52.9 NC_001798.1 + 35000 0.67 0.958449
Target:  5'- cCGG-CCGgggCGCACCUcgGCGGC-Ca- -3'
miRNA:   3'- -GCCuGGCa--GUGUGGAuaUGUCGaGac -5'
5245 5' -52.9 NC_001798.1 + 112779 0.68 0.946142
Target:  5'- aGGGCgGaCGCACggaUGUGCGGCUCg- -3'
miRNA:   3'- gCCUGgCaGUGUGg--AUAUGUCGAGac -5'
5245 5' -52.9 NC_001798.1 + 94193 0.68 0.941558
Target:  5'- gCGGGCCGUgCcC-CCUGcUGCAGCUCc- -3'
miRNA:   3'- -GCCUGGCA-GuGuGGAU-AUGUCGAGac -5'
5245 5' -52.9 NC_001798.1 + 70635 0.68 0.926327
Target:  5'- gCGGACCGUCAC-CCagaGCuGC-CUGg -3'
miRNA:   3'- -GCCUGGCAGUGuGGauaUGuCGaGAC- -5'
5245 5' -52.9 NC_001798.1 + 70166 0.68 0.926327
Target:  5'- aCGGACCGUUGCAgguCCUGUugGggaGC-CUGa -3'
miRNA:   3'- -GCCUGGCAGUGU---GGAUAugU---CGaGAC- -5'
5245 5' -52.9 NC_001798.1 + 22861 0.69 0.914932
Target:  5'- cCGGACCGUCGCcccGCCgc-GCGGCcCg- -3'
miRNA:   3'- -GCCUGGCAGUG---UGGauaUGUCGaGac -5'
5245 5' -52.9 NC_001798.1 + 74399 0.69 0.914932
Target:  5'- gGGGCCGUgGCGCCg--GCGGaC-CUGa -3'
miRNA:   3'- gCCUGGCAgUGUGGauaUGUC-GaGAC- -5'
5245 5' -52.9 NC_001798.1 + 25649 0.7 0.85972
Target:  5'- gCGGGCUGUCcUGCCUGcugGCGGCcCUGg -3'
miRNA:   3'- -GCCUGGCAGuGUGGAUa--UGUCGaGAC- -5'
5245 5' -52.9 NC_001798.1 + 70562 0.7 0.851801
Target:  5'- cCGGGCUG-CGCACCacgGCGGCcCUGg -3'
miRNA:   3'- -GCCUGGCaGUGUGGauaUGUCGaGAC- -5'
5245 5' -52.9 NC_001798.1 + 71208 0.72 0.791005
Target:  5'- cCGG-CCGUCACcgGCCUGcUGCAGCUa-- -3'
miRNA:   3'- -GCCuGGCAGUG--UGGAU-AUGUCGAgac -5'
5245 5' -52.9 NC_001798.1 + 20143 0.73 0.698544
Target:  5'- gGGGCCGUaACGCCUGgcguucagacaggGCAGCUCg- -3'
miRNA:   3'- gCCUGGCAgUGUGGAUa------------UGUCGAGac -5'
5245 5' -52.9 NC_001798.1 + 61349 1.09 0.00619
Target:  5'- cCGGACCGUCACACCUAUACAGCUCUGu -3'
miRNA:   3'- -GCCUGGCAGUGUGGAUAUGUCGAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.