miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5246 3' -56.1 NC_001798.1 + 109366 0.68 0.841149
Target:  5'- cUGGCcGCCCGGGgagCAGcGGGCUGCGcGg -3'
miRNA:   3'- cACCGaUGGGCUCg--GUU-CCUGAUGC-C- -5'
5246 3' -56.1 NC_001798.1 + 72144 0.68 0.841149
Target:  5'- -cGGCcACCCGGGCCGGcgucGGGCccACGa -3'
miRNA:   3'- caCCGaUGGGCUCGGUU----CCUGa-UGCc -5'
5246 3' -56.1 NC_001798.1 + 45147 0.68 0.841149
Target:  5'- -aGGCUggcgcgccaccACCCGGGaCuCGAGGGCUccaccaucgACGGg -3'
miRNA:   3'- caCCGA-----------UGGGCUC-G-GUUCCUGA---------UGCC- -5'
5246 3' -56.1 NC_001798.1 + 422 0.68 0.841149
Target:  5'- -cGGCaGCCCcucccccccgcGcGCCAcGGGGCUGCGGu -3'
miRNA:   3'- caCCGaUGGG-----------CuCGGU-UCCUGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 56918 0.68 0.832961
Target:  5'- -cGGUUGCCCGGGUaguAGGug-GCGGc -3'
miRNA:   3'- caCCGAUGGGCUCGgu-UCCugaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 2807 0.68 0.832961
Target:  5'- -cGGCaGCgCCGGGCCcAGGGCccCGGc -3'
miRNA:   3'- caCCGaUG-GGCUCGGuUCCUGauGCC- -5'
5246 3' -56.1 NC_001798.1 + 18861 0.68 0.832961
Target:  5'- -aGGCUGgCCGAGCCucugauGGACUuGCc- -3'
miRNA:   3'- caCCGAUgGGCUCGGuu----CCUGA-UGcc -5'
5246 3' -56.1 NC_001798.1 + 132132 0.69 0.752092
Target:  5'- -aGGCgGCCCugcgccGCCGGGGGCcgGCGGg -3'
miRNA:   3'- caCCGaUGGGcu----CGGUUCCUGa-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 34835 0.69 0.771023
Target:  5'- -cGGggGCCCGGGCC--GGACcgccggGCGGg -3'
miRNA:   3'- caCCgaUGGGCUCGGuuCCUGa-----UGCC- -5'
5246 3' -56.1 NC_001798.1 + 102419 0.69 0.771023
Target:  5'- -cGGCgAUCUGGGCCuccaGGGGACUGgGGc -3'
miRNA:   3'- caCCGaUGGGCUCGG----UUCCUGAUgCC- -5'
5246 3' -56.1 NC_001798.1 + 125772 0.7 0.693075
Target:  5'- uUGGCcGagacgcaccUCCGGGCCGAGGugUACaGGg -3'
miRNA:   3'- cACCGaU---------GGGCUCGGUUCCugAUG-CC- -5'
5246 3' -56.1 NC_001798.1 + 124487 0.7 0.70309
Target:  5'- -aGGCUuccCCCccGCCAuggcggggggGGGGCUGCGGg -3'
miRNA:   3'- caCCGAu--GGGcuCGGU----------UCCUGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 151594 0.7 0.70309
Target:  5'- -gGGCUGCCCuggcgcucGGCCGGGGGC--CGGg -3'
miRNA:   3'- caCCGAUGGGc-------UCGGUUCCUGauGCC- -5'
5246 3' -56.1 NC_001798.1 + 32365 0.7 0.70309
Target:  5'- -gGGCggcCCCGAGCCcGGGGCccGCGa -3'
miRNA:   3'- caCCGau-GGGCUCGGuUCCUGa-UGCc -5'
5246 3' -56.1 NC_001798.1 + 154101 0.7 0.713045
Target:  5'- -gGGCgcgGCCgGcGCCGGGGACcccgGCGGc -3'
miRNA:   3'- caCCGa--UGGgCuCGGUUCCUGa---UGCC- -5'
5246 3' -56.1 NC_001798.1 + 106097 0.7 0.713045
Target:  5'- -cGGCgACCCGGcGCCGcgaccgccGGGuCUGCGGu -3'
miRNA:   3'- caCCGaUGGGCU-CGGU--------UCCuGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 125452 0.7 0.722932
Target:  5'- cGUGGagcguCCCGAcGCCcGGGACcACGGu -3'
miRNA:   3'- -CACCgau--GGGCU-CGGuUCCUGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 127611 0.7 0.722932
Target:  5'- gGUGucGCUgccGCCCGAGCUGAGGccGCUGCuGGu -3'
miRNA:   3'- -CAC--CGA---UGGGCUCGGUUCC--UGAUG-CC- -5'
5246 3' -56.1 NC_001798.1 + 153319 0.71 0.652601
Target:  5'- -gGGCUcggGCCCGAGCUcGGGcCU-CGGg -3'
miRNA:   3'- caCCGA---UGGGCUCGGuUCCuGAuGCC- -5'
5246 3' -56.1 NC_001798.1 + 11241 0.71 0.652601
Target:  5'- -gGGCcACUgcgGGGCCGAGGACUgACGGa -3'
miRNA:   3'- caCCGaUGGg--CUCGGUUCCUGA-UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.