Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5246 | 3' | -56.1 | NC_001798.1 | + | 9157 | 0.66 | 0.899353 |
Target: 5'- -cGGCgccGCCCGcGCCGGGGGgcagggucuCUgGCGGg -3' miRNA: 3'- caCCGa--UGGGCuCGGUUCCU---------GA-UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 2113 | 0.66 | 0.899353 |
Target: 5'- -cGGCgcgGCCCGcGGCCAGGuccucgcccGGCaGCGGc -3' miRNA: 3'- caCCGa--UGGGC-UCGGUUC---------CUGaUGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 142151 | 0.66 | 0.899353 |
Target: 5'- gGUGGUgcacgUGuuUGAGUCAGGGACgcgcGCGGu -3' miRNA: 3'- -CACCG-----AUggGCUCGGUUCCUGa---UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 76037 | 0.66 | 0.901895 |
Target: 5'- -gGGC--CCCGAgGCCAuccaggcgcggcuggAGGACgUGCGGa -3' miRNA: 3'- caCCGauGGGCU-CGGU---------------UCCUG-AUGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 75462 | 0.66 | 0.905639 |
Target: 5'- gGUGGCcgGCCCG-GCCGcGGccCUGCuGGa -3' miRNA: 3'- -CACCGa-UGGGCuCGGUuCCu-GAUG-CC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 15273 | 0.66 | 0.905639 |
Target: 5'- -cGGUgcCCCGGGUUccGGGCgugGCGGu -3' miRNA: 3'- caCCGauGGGCUCGGuuCCUGa--UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 144333 | 0.66 | 0.905639 |
Target: 5'- -cGGCgucgcaucGCCCGAcagccCCAGGGGCUGuuCGGg -3' miRNA: 3'- caCCGa-------UGGGCUc----GGUUCCUGAU--GCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 107442 | 0.66 | 0.911692 |
Target: 5'- -cGGCgacCCCGcGCCccgaccccGAGGACggcGCGGg -3' miRNA: 3'- caCCGau-GGGCuCGG--------UUCCUGa--UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 148069 | 0.66 | 0.911692 |
Target: 5'- gGUGGCggaaggAaaCGGGCCGGGGGC--CGGg -3' miRNA: 3'- -CACCGa-----UggGCUCGGUUCCUGauGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 153051 | 0.66 | 0.91751 |
Target: 5'- -cGGUUGgCCGGcGCCGcccccuGGGGCggGCGGa -3' miRNA: 3'- caCCGAUgGGCU-CGGU------UCCUGa-UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 112414 | 0.66 | 0.919772 |
Target: 5'- gGUGGCauaGCUgagcuccauggccggCGAGCCAcggggcGGACUugGGg -3' miRNA: 3'- -CACCGa--UGG---------------GCUCGGUu-----CCUGAugCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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