miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5246 3' -56.1 NC_001798.1 + 138782 0.67 0.849148
Target:  5'- cGUGuGCUGCCUGAGaaacgcccCCAGGcGCUGCGu -3'
miRNA:   3'- -CAC-CGAUGGGCUC--------GGUUCcUGAUGCc -5'
5246 3' -56.1 NC_001798.1 + 28733 0.67 0.849148
Target:  5'- -gGGCccgaGCCCGAGCCcGGGcccACgaagACGGc -3'
miRNA:   3'- caCCGa---UGGGCUCGGuUCC---UGa---UGCC- -5'
5246 3' -56.1 NC_001798.1 + 149945 0.67 0.856952
Target:  5'- -cGGCgACCgCG-GCCuGGGACgACGGa -3'
miRNA:   3'- caCCGaUGG-GCuCGGuUCCUGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 22390 0.67 0.864555
Target:  5'- -gGGCggaACCCcggcGAGCCGGGGcGCgGCGGc -3'
miRNA:   3'- caCCGa--UGGG----CUCGGUUCC-UGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 93484 0.67 0.87195
Target:  5'- cGUGG-UGCCCGGGUacgAGGGGCgccccACGGc -3'
miRNA:   3'- -CACCgAUGGGCUCGg--UUCCUGa----UGCC- -5'
5246 3' -56.1 NC_001798.1 + 111632 0.67 0.87195
Target:  5'- -cGGCagACUCGcGUCGGGGGCgcucgGCGGg -3'
miRNA:   3'- caCCGa-UGGGCuCGGUUCCUGa----UGCC- -5'
5246 3' -56.1 NC_001798.1 + 23884 0.67 0.879133
Target:  5'- -gGGC-GCCCGAgGCgGAGGAggcGCGGg -3'
miRNA:   3'- caCCGaUGGGCU-CGgUUCCUga-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 2040 0.67 0.879839
Target:  5'- -cGGUUGCCCaGGGCCGccagcaggcAGGACagcccgccgcgcucgGCGGa -3'
miRNA:   3'- caCCGAUGGG-CUCGGU---------UCCUGa--------------UGCC- -5'
5246 3' -56.1 NC_001798.1 + 101739 0.67 0.881944
Target:  5'- -cGGCgGCCCGGGCCGuguccacguucacguGGGccgcGCUGCuGGc -3'
miRNA:   3'- caCCGaUGGGCUCGGU---------------UCC----UGAUG-CC- -5'
5246 3' -56.1 NC_001798.1 + 150499 0.67 0.884721
Target:  5'- uGUGGCagaccucccccCCCGGGgcCCGAGGACaccugUGCGGa -3'
miRNA:   3'- -CACCGau---------GGGCUC--GGUUCCUG-----AUGCC- -5'
5246 3' -56.1 NC_001798.1 + 112414 0.66 0.919772
Target:  5'- gGUGGCauaGCUgagcuccauggccggCGAGCCAcggggcGGACUugGGg -3'
miRNA:   3'- -CACCGa--UGG---------------GCUCGGUu-----CCUGAugCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.