Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5246 | 5' | -50.2 | NC_001798.1 | + | 103561 | 0.66 | 0.995237 |
Target: 5'- cCGCCC-GGUC-GGgcAGAgGCGCCUc -3' miRNA: 3'- -GCGGGaUCAGaCCaaUUUaUGCGGAa -5' |
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5246 | 5' | -50.2 | NC_001798.1 | + | 111888 | 0.66 | 0.994441 |
Target: 5'- aGCUCgggAGcCgGGggAGGUGCGCCUg -3' miRNA: 3'- gCGGGa--UCaGaCCaaUUUAUGCGGAa -5' |
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5246 | 5' | -50.2 | NC_001798.1 | + | 45058 | 0.67 | 0.983728 |
Target: 5'- aCGCCCUAGagucgCUGGacgacacccgGCGCCUc -3' miRNA: 3'- -GCGGGAUCa----GACCaauuua----UGCGGAa -5' |
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5246 | 5' | -50.2 | NC_001798.1 | + | 52478 | 0.68 | 0.971162 |
Target: 5'- aCGCCCUGGcCUGcGggGAcgcGCGCCg- -3' miRNA: 3'- -GCGGGAUCaGAC-CaaUUua-UGCGGaa -5' |
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5246 | 5' | -50.2 | NC_001798.1 | + | 125466 | 0.69 | 0.964704 |
Target: 5'- aCGCCCgggaccacGGUCUGGUg----GCGCUUg -3' miRNA: 3'- -GCGGGa-------UCAGACCAauuuaUGCGGAa -5' |
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5246 | 5' | -50.2 | NC_001798.1 | + | 58121 | 0.69 | 0.957295 |
Target: 5'- gGCCCggcGUCUGGguccuugUGAAggcgGCGCCg- -3' miRNA: 3'- gCGGGau-CAGACCa------AUUUa---UGCGGaa -5' |
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5246 | 5' | -50.2 | NC_001798.1 | + | 39718 | 0.73 | 0.835693 |
Target: 5'- uGCCUUGGUCgacgggGGUUGGAUGCggGCCa- -3' miRNA: 3'- gCGGGAUCAGa-----CCAAUUUAUG--CGGaa -5' |
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5246 | 5' | -50.2 | NC_001798.1 | + | 61100 | 1.06 | 0.014593 |
Target: 5'- cCGCCCUAGUCUGGUUAAAUACGCCUUc -3' miRNA: 3'- -GCGGGAUCAGACCAAUUUAUGCGGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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