miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5246 5' -50.2 NC_001798.1 + 103561 0.66 0.995237
Target:  5'- cCGCCC-GGUC-GGgcAGAgGCGCCUc -3'
miRNA:   3'- -GCGGGaUCAGaCCaaUUUaUGCGGAa -5'
5246 5' -50.2 NC_001798.1 + 111888 0.66 0.994441
Target:  5'- aGCUCgggAGcCgGGggAGGUGCGCCUg -3'
miRNA:   3'- gCGGGa--UCaGaCCaaUUUAUGCGGAa -5'
5246 5' -50.2 NC_001798.1 + 45058 0.67 0.983728
Target:  5'- aCGCCCUAGagucgCUGGacgacacccgGCGCCUc -3'
miRNA:   3'- -GCGGGAUCa----GACCaauuua----UGCGGAa -5'
5246 5' -50.2 NC_001798.1 + 52478 0.68 0.971162
Target:  5'- aCGCCCUGGcCUGcGggGAcgcGCGCCg- -3'
miRNA:   3'- -GCGGGAUCaGAC-CaaUUua-UGCGGaa -5'
5246 5' -50.2 NC_001798.1 + 125466 0.69 0.964704
Target:  5'- aCGCCCgggaccacGGUCUGGUg----GCGCUUg -3'
miRNA:   3'- -GCGGGa-------UCAGACCAauuuaUGCGGAa -5'
5246 5' -50.2 NC_001798.1 + 58121 0.69 0.957295
Target:  5'- gGCCCggcGUCUGGguccuugUGAAggcgGCGCCg- -3'
miRNA:   3'- gCGGGau-CAGACCa------AUUUa---UGCGGaa -5'
5246 5' -50.2 NC_001798.1 + 39718 0.73 0.835693
Target:  5'- uGCCUUGGUCgacgggGGUUGGAUGCggGCCa- -3'
miRNA:   3'- gCGGGAUCAGa-----CCAAUUUAUG--CGGaa -5'
5246 5' -50.2 NC_001798.1 + 61100 1.06 0.014593
Target:  5'- cCGCCCUAGUCUGGUUAAAUACGCCUUc -3'
miRNA:   3'- -GCGGGAUCAGACCAAUUUAUGCGGAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.