miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5247 3' -51.1 NC_001798.1 + 72336 0.66 0.993255
Target:  5'- -gGGUGCUGCaGGAGCUCGcCGAg-CGc -3'
miRNA:   3'- caUCAUGGCG-CUUCGAGCaGUUgaGC- -5'
5247 3' -51.1 NC_001798.1 + 84606 0.66 0.99109
Target:  5'- -cGGUGCCGgugccccgcCGAAGCgcgCGUCAGCccCGc -3'
miRNA:   3'- caUCAUGGC---------GCUUCGa--GCAGUUGa-GC- -5'
5247 3' -51.1 NC_001798.1 + 17369 0.67 0.987496
Target:  5'- aUGGUGCCuGCGAucccguaauggaaggGGCUCGaUCGACa-- -3'
miRNA:   3'- cAUCAUGG-CGCU---------------UCGAGC-AGUUGagc -5'
5247 3' -51.1 NC_001798.1 + 75311 0.67 0.985145
Target:  5'- -aGGUgGCCGCGu-GUUCG-CAGCUCa -3'
miRNA:   3'- caUCA-UGGCGCuuCGAGCaGUUGAGc -5'
5247 3' -51.1 NC_001798.1 + 38102 0.67 0.98327
Target:  5'- -aGGU-CCGCGAAGUUgCGg-AGCUCGg -3'
miRNA:   3'- caUCAuGGCGCUUCGA-GCagUUGAGC- -5'
5247 3' -51.1 NC_001798.1 + 2565 0.68 0.97899
Target:  5'- -gGGgcgGCCGCGggGCggggggCGUCcgcgcGGCUCu -3'
miRNA:   3'- caUCa--UGGCGCuuCGa-----GCAG-----UUGAGc -5'
5247 3' -51.1 NC_001798.1 + 78331 0.68 0.976568
Target:  5'- -gAGgccACCGCGGAGCUgGUCcgGAC-CGg -3'
miRNA:   3'- caUCa--UGGCGCUUCGAgCAG--UUGaGC- -5'
5247 3' -51.1 NC_001798.1 + 77325 0.68 0.97112
Target:  5'- aUAGcGCCGCGggGUaUGUaaaggCGACUCGg -3'
miRNA:   3'- cAUCaUGGCGCuuCGaGCA-----GUUGAGC- -5'
5247 3' -51.1 NC_001798.1 + 126626 0.68 0.97112
Target:  5'- -gGGUACgGCGAGGUgcaGUUGAUUCGc -3'
miRNA:   3'- caUCAUGgCGCUUCGag-CAGUUGAGC- -5'
5247 3' -51.1 NC_001798.1 + 45416 0.68 0.96808
Target:  5'- ----cACCGCGggGCUUGgagCGAC-CGa -3'
miRNA:   3'- caucaUGGCGCuuCGAGCa--GUUGaGC- -5'
5247 3' -51.1 NC_001798.1 + 46981 0.69 0.964818
Target:  5'- gGUGGUGCUGUu--GUUCGUCGcGCUCGu -3'
miRNA:   3'- -CAUCAUGGCGcuuCGAGCAGU-UGAGC- -5'
5247 3' -51.1 NC_001798.1 + 81081 0.69 0.964818
Target:  5'- uGUGGcUACCGCGggGgaCGUU--CUCGc -3'
miRNA:   3'- -CAUC-AUGGCGCuuCgaGCAGuuGAGC- -5'
5247 3' -51.1 NC_001798.1 + 93926 0.69 0.960969
Target:  5'- --cGUACCGCGcggccaccGAGCgCGUCAuggccgaGCUCGa -3'
miRNA:   3'- cauCAUGGCGC--------UUCGaGCAGU-------UGAGC- -5'
5247 3' -51.1 NC_001798.1 + 97407 0.69 0.953651
Target:  5'- ---cUGCUGCGGcGGCUCGUCAGCccCGa -3'
miRNA:   3'- caucAUGGCGCU-UCGAGCAGUUGa-GC- -5'
5247 3' -51.1 NC_001798.1 + 3274 0.7 0.930166
Target:  5'- -gGGcACCGCGc-GCUCGUCGGC-CGg -3'
miRNA:   3'- caUCaUGGCGCuuCGAGCAGUUGaGC- -5'
5247 3' -51.1 NC_001798.1 + 4715 0.71 0.919009
Target:  5'- --cGU-CCGCGGcaGGCUCGUCGACg-- -3'
miRNA:   3'- cauCAuGGCGCU--UCGAGCAGUUGagc -5'
5247 3' -51.1 NC_001798.1 + 79551 0.71 0.919009
Target:  5'- cUGGUGCUGCguGAGGC-CGUCAgcGCUCu -3'
miRNA:   3'- cAUCAUGGCG--CUUCGaGCAGU--UGAGc -5'
5247 3' -51.1 NC_001798.1 + 118002 0.71 0.893677
Target:  5'- -gGGUGCCGCG-AGCUCGUggaaGACcCGu -3'
miRNA:   3'- caUCAUGGCGCuUCGAGCAg---UUGaGC- -5'
5247 3' -51.1 NC_001798.1 + 126690 0.85 0.266231
Target:  5'- aGUGGUuuGCCGUGGAGCUCGUCGcgacccuGCUCGu -3'
miRNA:   3'- -CAUCA--UGGCGCUUCGAGCAGU-------UGAGC- -5'
5247 3' -51.1 NC_001798.1 + 60413 1.09 0.009376
Target:  5'- aGUAGUACCGCGAAGCUCGUCAACUCGc -3'
miRNA:   3'- -CAUCAUGGCGCUUCGAGCAGUUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.