miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5248 3' -53.6 NC_001798.1 + 115469 0.66 0.967699
Target:  5'- -cGCGGCc--GUCGGGGgcgugaACCACGAc- -3'
miRNA:   3'- auUGCCGcuaCAGCCCC------UGGUGUUug -5'
5248 3' -53.6 NC_001798.1 + 29920 0.66 0.967699
Target:  5'- gGGCGGUGGgcUCGGGGGCgggaCGCuuGACg -3'
miRNA:   3'- aUUGCCGCUacAGCCCCUG----GUGu-UUG- -5'
5248 3' -53.6 NC_001798.1 + 83578 0.66 0.967699
Target:  5'- gGGCGGUGAaacUG-CGGGGcgGCCAUcgGGACc -3'
miRNA:   3'- aUUGCCGCU---ACaGCCCC--UGGUG--UUUG- -5'
5248 3' -53.6 NC_001798.1 + 84960 0.66 0.967699
Target:  5'- cAGCGcGCa--GUCGGGGAUCGCGu-- -3'
miRNA:   3'- aUUGC-CGcuaCAGCCCCUGGUGUuug -5'
5248 3' -53.6 NC_001798.1 + 11177 0.66 0.967699
Target:  5'- aUGGgGGCGGUGg-GGcGGGCCugcCGAACg -3'
miRNA:   3'- -AUUgCCGCUACagCC-CCUGGu--GUUUG- -5'
5248 3' -53.6 NC_001798.1 + 66172 0.66 0.967699
Target:  5'- cGACGaGCG-UGuUCGGGGugCuguggauCAGACa -3'
miRNA:   3'- aUUGC-CGCuAC-AGCCCCugGu------GUUUG- -5'
5248 3' -53.6 NC_001798.1 + 70292 0.66 0.967699
Target:  5'- cGGCGGCGuuucuguUGUCGGGcGCgGCGGu- -3'
miRNA:   3'- aUUGCCGCu------ACAGCCCcUGgUGUUug -5'
5248 3' -53.6 NC_001798.1 + 111391 0.66 0.967699
Target:  5'- aGACGGCGAgcuuuuggGUCGGgcucaGGGCCAg---- -3'
miRNA:   3'- aUUGCCGCUa-------CAGCC-----CCUGGUguuug -5'
5248 3' -53.6 NC_001798.1 + 97251 0.66 0.967065
Target:  5'- gGGCGGCGGgcggagcacuucGaucgcgcguUCGGGGGCCACcuGGCg -3'
miRNA:   3'- aUUGCCGCUa-----------C---------AGCCCCUGGUGu-UUG- -5'
5248 3' -53.6 NC_001798.1 + 15905 0.66 0.96444
Target:  5'- gGGCGG-GGUGggaaGGGGGCgUACGGACc -3'
miRNA:   3'- aUUGCCgCUACag--CCCCUG-GUGUUUG- -5'
5248 3' -53.6 NC_001798.1 + 34728 0.66 0.96444
Target:  5'- aAGgGGCGAggGUCGGGc-CCGgGAGCg -3'
miRNA:   3'- aUUgCCGCUa-CAGCCCcuGGUgUUUG- -5'
5248 3' -53.6 NC_001798.1 + 84747 0.66 0.96444
Target:  5'- gGGCGGCGGggccGUCGGGcGCUuuuAUAGGCc -3'
miRNA:   3'- aUUGCCGCUa---CAGCCCcUGG---UGUUUG- -5'
5248 3' -53.6 NC_001798.1 + 115736 0.66 0.963419
Target:  5'- cGGCGGCGAaGUccccccggccggucCGGGGGCaucCAGGCc -3'
miRNA:   3'- aUUGCCGCUaCA--------------GCCCCUGgu-GUUUG- -5'
5248 3' -53.6 NC_001798.1 + 41639 0.66 0.960597
Target:  5'- aUGACGGUcgugaGGUGcUGGagggagcGGACCGCGAGCa -3'
miRNA:   3'- -AUUGCCG-----CUACaGCC-------CCUGGUGUUUG- -5'
5248 3' -53.6 NC_001798.1 + 74078 0.66 0.960597
Target:  5'- -uACGGCGAggUGggcuucuUCGGGGAgcCCACGGc- -3'
miRNA:   3'- auUGCCGCU--AC-------AGCCCCU--GGUGUUug -5'
5248 3' -53.6 NC_001798.1 + 14474 0.66 0.959869
Target:  5'- cGGCGGCGGUcaaGguuuuuguuuuuguUCGGGGACC-CGggUg -3'
miRNA:   3'- aUUGCCGCUA---C--------------AGCCCCUGGuGUuuG- -5'
5248 3' -53.6 NC_001798.1 + 4395 0.66 0.957247
Target:  5'- gUggUGGUGGUGUCGGcGGGgCGCc--- -3'
miRNA:   3'- -AuuGCCGCUACAGCC-CCUgGUGuuug -5'
5248 3' -53.6 NC_001798.1 + 92400 0.66 0.957247
Target:  5'- gUGGCcGCGGUcGUCGGGucCCGCAcGACg -3'
miRNA:   3'- -AUUGcCGCUA-CAGCCCcuGGUGU-UUG- -5'
5248 3' -53.6 NC_001798.1 + 150422 0.66 0.957247
Target:  5'- gGGCGGCGgcGgcgCGGGGcggACUcCGGACg -3'
miRNA:   3'- aUUGCCGCuaCa--GCCCC---UGGuGUUUG- -5'
5248 3' -53.6 NC_001798.1 + 122170 0.66 0.957247
Target:  5'- cGACGuGCucacccucGUGcCGGGGACCGcCAAGCc -3'
miRNA:   3'- aUUGC-CGc-------UACaGCCCCUGGU-GUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.