miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5248 3' -53.6 NC_001798.1 + 237 0.66 0.949118
Target:  5'- -cGCGGCag-GaCGGGGACUAgCAGGCu -3'
miRNA:   3'- auUGCCGcuaCaGCCCCUGGU-GUUUG- -5'
5248 3' -53.6 NC_001798.1 + 1547 0.66 0.953301
Target:  5'- -cGCGGCGGUacucgcgCGGGGA-CAUggGCa -3'
miRNA:   3'- auUGCCGCUAca-----GCCCCUgGUGuuUG- -5'
5248 3' -53.6 NC_001798.1 + 1641 0.72 0.72937
Target:  5'- cAGCGGCGGcgcGUCGGGG--UACAGGCg -3'
miRNA:   3'- aUUGCCGCUa--CAGCCCCugGUGUUUG- -5'
5248 3' -53.6 NC_001798.1 + 2447 0.66 0.952071
Target:  5'- cUGGCGGCGccagccgcccugcggGUCGGGGcCCucgGCGGGCc -3'
miRNA:   3'- -AUUGCCGCua-------------CAGCCCCuGG---UGUUUG- -5'
5248 3' -53.6 NC_001798.1 + 2522 0.7 0.832418
Target:  5'- cGGCGGCGgcGUCGgcGGGGCgGgGGGCg -3'
miRNA:   3'- aUUGCCGCuaCAGC--CCCUGgUgUUUG- -5'
5248 3' -53.6 NC_001798.1 + 2673 0.68 0.918865
Target:  5'- -cGCGGCGcgGaggCGGGcGCgGCGAGCg -3'
miRNA:   3'- auUGCCGCuaCa--GCCCcUGgUGUUUG- -5'
5248 3' -53.6 NC_001798.1 + 2708 0.7 0.805192
Target:  5'- -cGCGGCGAcggUGUCGgccagcaGGGGgCGCAGGCu -3'
miRNA:   3'- auUGCCGCU---ACAGC-------CCCUgGUGUUUG- -5'
5248 3' -53.6 NC_001798.1 + 3321 0.67 0.935106
Target:  5'- gGGCGGCGgcGgCGGcGGGcuucCCGCGGGCg -3'
miRNA:   3'- aUUGCCGCuaCaGCC-CCU----GGUGUUUG- -5'
5248 3' -53.6 NC_001798.1 + 4212 0.7 0.815046
Target:  5'- -uGCGGCGcUGgCGGGGG-CGCGGGCg -3'
miRNA:   3'- auUGCCGCuACaGCCCCUgGUGUUUG- -5'
5248 3' -53.6 NC_001798.1 + 4395 0.66 0.957247
Target:  5'- gUggUGGUGGUGUCGGcGGGgCGCc--- -3'
miRNA:   3'- -AuuGCCGCUACAGCC-CCUgGUGuuug -5'
5248 3' -53.6 NC_001798.1 + 4875 0.66 0.953301
Target:  5'- gGGCGGCGGUccGUCGGcuGGAuCCGgAGAUc -3'
miRNA:   3'- aUUGCCGCUA--CAGCC--CCU-GGUgUUUG- -5'
5248 3' -53.6 NC_001798.1 + 6019 0.71 0.766821
Target:  5'- cAGCGGCGGcaucgcgaaGGGGGCCACAgcgaGACa -3'
miRNA:   3'- aUUGCCGCUacag-----CCCCUGGUGU----UUG- -5'
5248 3' -53.6 NC_001798.1 + 6062 0.68 0.906795
Target:  5'- cGGCGGCGAg--CGGGGcACCgACGcACc -3'
miRNA:   3'- aUUGCCGCUacaGCCCC-UGG-UGUuUG- -5'
5248 3' -53.6 NC_001798.1 + 10694 0.73 0.678251
Target:  5'- cGACgGGCGca---GGGGACCGCAGGCa -3'
miRNA:   3'- aUUG-CCGCuacagCCCCUGGUGUUUG- -5'
5248 3' -53.6 NC_001798.1 + 11177 0.66 0.967699
Target:  5'- aUGGgGGCGGUGg-GGcGGGCCugcCGAACg -3'
miRNA:   3'- -AUUgCCGCUACagCC-CCUGGu--GUUUG- -5'
5248 3' -53.6 NC_001798.1 + 12880 0.72 0.698884
Target:  5'- cGGCGGCagcagggugcuGGUGUaCGGGGGCUugGGGCc -3'
miRNA:   3'- aUUGCCG-----------CUACA-GCCCCUGGugUUUG- -5'
5248 3' -53.6 NC_001798.1 + 14474 0.66 0.959869
Target:  5'- cGGCGGCGGUcaaGguuuuuguuuuuguUCGGGGACC-CGggUg -3'
miRNA:   3'- aUUGCCGCUA---C--------------AGCCCCUGGuGUuuG- -5'
5248 3' -53.6 NC_001798.1 + 15905 0.66 0.96444
Target:  5'- gGGCGG-GGUGggaaGGGGGCgUACGGACc -3'
miRNA:   3'- aUUGCCgCUACag--CCCCUG-GUGUUUG- -5'
5248 3' -53.6 NC_001798.1 + 16052 0.66 0.953301
Target:  5'- cGACGcGUGGUagGUCgcuGGGGGCgGCGGGCg -3'
miRNA:   3'- aUUGC-CGCUA--CAG---CCCCUGgUGUUUG- -5'
5248 3' -53.6 NC_001798.1 + 16174 0.66 0.953301
Target:  5'- gGGCGGCccg--CGGGGACCGgGggGACg -3'
miRNA:   3'- aUUGCCGcuacaGCCCCUGGUgU--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.