miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5248 5' -52.8 NC_001798.1 + 126909 0.66 0.980868
Target:  5'- cUGcUUCACaGACCUGGcgcgcgCCGugGUGu -3'
miRNA:   3'- -ACcAAGUG-CUGGACCuua---GGCugCAU- -5'
5248 5' -52.8 NC_001798.1 + 109057 0.66 0.978627
Target:  5'- aGGUaUCGCGucuuuguCCUGGGGgccCCGACGc- -3'
miRNA:   3'- aCCA-AGUGCu------GGACCUUa--GGCUGCau -5'
5248 5' -52.8 NC_001798.1 + 66749 0.66 0.976197
Target:  5'- cGGcgcCACGuccGCCUGGggUgCGGCGg- -3'
miRNA:   3'- aCCaa-GUGC---UGGACCuuAgGCUGCau -5'
5248 5' -52.8 NC_001798.1 + 51855 0.66 0.97357
Target:  5'- aGGggCGCGGCUcGGAGcUCGACGa- -3'
miRNA:   3'- aCCaaGUGCUGGaCCUUaGGCUGCau -5'
5248 5' -52.8 NC_001798.1 + 12727 0.66 0.97357
Target:  5'- gUGGUgcggCGCGAcguCCUGGA--UCGACGg- -3'
miRNA:   3'- -ACCAa---GUGCU---GGACCUuaGGCUGCau -5'
5248 5' -52.8 NC_001798.1 + 63386 0.67 0.967699
Target:  5'- ---gUCGgGGCCUGGGAUCgGAUGa- -3'
miRNA:   3'- accaAGUgCUGGACCUUAGgCUGCau -5'
5248 5' -52.8 NC_001798.1 + 116990 0.67 0.967699
Target:  5'- cGGcccugCGCGACCUGGcg-CgCGACGUc -3'
miRNA:   3'- aCCaa---GUGCUGGACCuuaG-GCUGCAu -5'
5248 5' -52.8 NC_001798.1 + 53506 0.67 0.96444
Target:  5'- cGGUcgugcccaGCGGCCUGGAcauccCCGACGa- -3'
miRNA:   3'- aCCAag------UGCUGGACCUua---GGCUGCau -5'
5248 5' -52.8 NC_001798.1 + 9951 0.67 0.96444
Target:  5'- cGGgg-GCGuaguCCUGGAAcagCCGGCGUAc -3'
miRNA:   3'- aCCaagUGCu---GGACCUUa--GGCUGCAU- -5'
5248 5' -52.8 NC_001798.1 + 149945 0.67 0.953301
Target:  5'- cGGcgacCGCGGCCUGGGAcgacggagacgCCGACGg- -3'
miRNA:   3'- aCCaa--GUGCUGGACCUUa----------GGCUGCau -5'
5248 5' -52.8 NC_001798.1 + 154099 0.68 0.940023
Target:  5'- cGGggCGCGGCCggcgccgGGGAccCCGGCGg- -3'
miRNA:   3'- aCCaaGUGCUGGa------CCUUa-GGCUGCau -5'
5248 5' -52.8 NC_001798.1 + 125683 0.68 0.935106
Target:  5'- gGGgggUCGgGGCgaaGGAGUCCGACGUc -3'
miRNA:   3'- aCCa--AGUgCUGga-CCUUAGGCUGCAu -5'
5248 5' -52.8 NC_001798.1 + 105374 0.68 0.935106
Target:  5'- cGGgcagcUCgGCGGCCUGGAGggCGGCGUu -3'
miRNA:   3'- aCCa----AG-UGCUGGACCUUagGCUGCAu -5'
5248 5' -52.8 NC_001798.1 + 52184 0.68 0.935106
Target:  5'- cGGggCGCGuCCUGGAcgugCUGGCGg- -3'
miRNA:   3'- aCCaaGUGCuGGACCUua--GGCUGCau -5'
5248 5' -52.8 NC_001798.1 + 2403 0.68 0.929942
Target:  5'- aGGgcgGCGGCCgaGGGcgCCGGCGUGu -3'
miRNA:   3'- aCCaagUGCUGGa-CCUuaGGCUGCAU- -5'
5248 5' -52.8 NC_001798.1 + 149294 0.69 0.900392
Target:  5'- gGGUggCGCGACC-GGAggCCGugGa- -3'
miRNA:   3'- aCCAa-GUGCUGGaCCUuaGGCugCau -5'
5248 5' -52.8 NC_001798.1 + 80513 0.7 0.886862
Target:  5'- cUGGccgCACG-CCUGGAGUCUGGCc-- -3'
miRNA:   3'- -ACCaa-GUGCuGGACCUUAGGCUGcau -5'
5248 5' -52.8 NC_001798.1 + 42986 0.7 0.872396
Target:  5'- cGGUUCACGuacAUCUGGcccCCGACGg- -3'
miRNA:   3'- aCCAAGUGC---UGGACCuuaGGCUGCau -5'
5248 5' -52.8 NC_001798.1 + 81414 0.76 0.543383
Target:  5'- cUGGaucCACGGCCUGGAggagcuggcGUCCGACGa- -3'
miRNA:   3'- -ACCaa-GUGCUGGACCU---------UAGGCUGCau -5'
5248 5' -52.8 NC_001798.1 + 58243 1.07 0.008068
Target:  5'- gUGGUUCACGACCUGGAAUCCGACGUAc -3'
miRNA:   3'- -ACCAAGUGCUGGACCUUAGGCUGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.