miRNA display CGI


Results 1 - 20 of 355 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 76918 0.66 0.616991
Target:  5'- gGCCgauGCCGUCCGgGGCCcccccccggaagucaCGgCGGCGCu -3'
miRNA:   3'- -CGG---CGGUAGGCgCCGGc--------------GUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 1496 0.66 0.616011
Target:  5'- cGUCGCCcgcgcCCGaggcggcggccCGGCCGU-CCAGCGCc -3'
miRNA:   3'- -CGGCGGua---GGC-----------GCCGGCGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 24783 0.66 0.616011
Target:  5'- aGCUGCgGUUCGUGcGCgaCGCGCUGGUGCu -3'
miRNA:   3'- -CGGCGgUAGGCGC-CG--GCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 32366 0.66 0.616011
Target:  5'- gGCgGCCccgagcCCGgGGcCCGCGacCCGGCGCc -3'
miRNA:   3'- -CGgCGGua----GGCgCC-GGCGU--GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 52521 0.66 0.616011
Target:  5'- gGCgGCCG--CGCGcGCCGUGCUGGCGa -3'
miRNA:   3'- -CGgCGGUagGCGC-CGGCGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 53091 0.66 0.616011
Target:  5'- uCCGCCAUgcaaCGcCGGgCGCG-CGGCGCg -3'
miRNA:   3'- cGGCGGUAg---GC-GCCgGCGUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 77722 0.66 0.616011
Target:  5'- gGCCGCCGgcgUCGaGGCgGCGCUGGacCGCg -3'
miRNA:   3'- -CGGCGGUa--GGCgCCGgCGUGGUC--GUG- -5'
5249 3' -63 NC_001798.1 + 113574 0.66 0.616011
Target:  5'- aCCGCCAgCCaGCuGCUGC-CCcGCACg -3'
miRNA:   3'- cGGCGGUaGG-CGcCGGCGuGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 140 0.66 0.616011
Target:  5'- gGCCGCUcccCCGCGGgCGcCGCCccuccccccGCGCg -3'
miRNA:   3'- -CGGCGGua-GGCGCCgGC-GUGGu--------CGUG- -5'
5249 3' -63 NC_001798.1 + 97796 0.66 0.616011
Target:  5'- cGCCGCgGUgccaacggcuUCGCGGCgCGCGC--GCGCu -3'
miRNA:   3'- -CGGCGgUA----------GGCGCCG-GCGUGguCGUG- -5'
5249 3' -63 NC_001798.1 + 82365 0.66 0.616011
Target:  5'- cCCGCCG--CGCGGaCgCGCAUCcGCGCg -3'
miRNA:   3'- cGGCGGUagGCGCC-G-GCGUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 154478 0.66 0.616011
Target:  5'- gGCCGCUcccCCGCGGgCGcCGCCccuccccccGCGCg -3'
miRNA:   3'- -CGGCGGua-GGCGCCgGC-GUGGu--------CGUG- -5'
5249 3' -63 NC_001798.1 + 135392 0.66 0.616011
Target:  5'- gGCCGCCGUCUGCcuGCagaucgaGCagacgGCCAGCuCg -3'
miRNA:   3'- -CGGCGGUAGGCGc-CGg------CG-----UGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 92979 0.66 0.616011
Target:  5'- -aCGCCGUggccCgCGCGGCCGCccACCuGGCGu -3'
miRNA:   3'- cgGCGGUA----G-GCGCCGGCG--UGG-UCGUg -5'
5249 3' -63 NC_001798.1 + 2436 0.66 0.616011
Target:  5'- gGCC-CCggCgGCuGGCgGCGCCAGC-Cg -3'
miRNA:   3'- -CGGcGGuaGgCG-CCGgCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 70211 0.66 0.615031
Target:  5'- gGCCGCCcUCCcccucgaGCGaGCCGgCgGgCAGCGCg -3'
miRNA:   3'- -CGGCGGuAGG-------CGC-CGGC-G-UgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 118805 0.66 0.614051
Target:  5'- cGUCGCCugccCCGUGGaccuggggcucaCGCacGCCGGCACc -3'
miRNA:   3'- -CGGCGGua--GGCGCCg-----------GCG--UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 111017 0.66 0.612092
Target:  5'- gGCCGCggccaggCGUCCGUGGCCGgcguacaacaCGCCcaggaacgcgccgaGGUACa -3'
miRNA:   3'- -CGGCG-------GUAGGCGCCGGC----------GUGG--------------UCGUG- -5'
5249 3' -63 NC_001798.1 + 67095 0.66 0.610134
Target:  5'- gGCCGUCugaccaugacUCCGCGGCCccgacguccuucucgGCGCCgccccuGGCAUc -3'
miRNA:   3'- -CGGCGGu---------AGGCGCCGG---------------CGUGG------UCGUG- -5'
5249 3' -63 NC_001798.1 + 152229 0.66 0.606218
Target:  5'- uCUGCCG-CgGCGGCCGC-UCGGgGCc -3'
miRNA:   3'- cGGCGGUaGgCGCCGGCGuGGUCgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.