miRNA display CGI


Results 81 - 100 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 32761 0.67 0.537559
Target:  5'- -gCGCCAcCCGUGGUcucgggagcagggCGCGCCcGCGCc -3'
miRNA:   3'- cgGCGGUaGGCGCCG-------------GCGUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 23979 0.67 0.537559
Target:  5'- -aCGCCcugAUCaCGCGGCUGCuguacacGCCGGaCGCg -3'
miRNA:   3'- cgGCGG---UAG-GCGCCGGCG-------UGGUC-GUG- -5'
5249 3' -63 NC_001798.1 + 78645 0.67 0.535659
Target:  5'- gGUCGCCGUCC-CGGCgaccguggccaagaCGCucgACCAGgCGCg -3'
miRNA:   3'- -CGGCGGUAGGcGCCG--------------GCG---UGGUC-GUG- -5'
5249 3' -63 NC_001798.1 + 9630 0.67 0.535659
Target:  5'- gGCCGCCcccagcaCCGCcccgaggcgcagcgGGCCGCGCgCggagGGCGCg -3'
miRNA:   3'- -CGGCGGua-----GGCG--------------CCGGCGUG-G----UCGUG- -5'
5249 3' -63 NC_001798.1 + 97017 0.67 0.529026
Target:  5'- cCCGCCgauagcucuucuGUCCGCgaggaGGCCGaCGCCcugcuggaGGCGCa -3'
miRNA:   3'- cGGCGG------------UAGGCG-----CCGGC-GUGG--------UCGUG- -5'
5249 3' -63 NC_001798.1 + 68229 0.67 0.529026
Target:  5'- cCCGCCAccccgCCGCGcGCCaCACCA-CGCc -3'
miRNA:   3'- cGGCGGUa----GGCGC-CGGcGUGGUcGUG- -5'
5249 3' -63 NC_001798.1 + 27242 0.67 0.529026
Target:  5'- gGCCGCgGgggaggcggCCGCGGgaCCGCAgCCccguGGCGCg -3'
miRNA:   3'- -CGGCGgUa--------GGCGCC--GGCGU-GG----UCGUG- -5'
5249 3' -63 NC_001798.1 + 25470 0.67 0.529026
Target:  5'- cGCCGCCuucggcccgCUGCGcgccucgggcccGCUGCGCC-GCGCg -3'
miRNA:   3'- -CGGCGGua-------GGCGC------------CGGCGUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 4350 0.67 0.53851
Target:  5'- gGCgGCCGagCGcCGGCggggggCGCGCCGGCGg -3'
miRNA:   3'- -CGgCGGUagGC-GCCG------GCGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 42727 0.67 0.53851
Target:  5'- cGUCGCCAccggCCGagGGcCCGuCGCCcGCACa -3'
miRNA:   3'- -CGGCGGUa---GGCg-CC-GGC-GUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 149243 0.67 0.548053
Target:  5'- cCCGCgGgggcgUCGcCGGCCgGCGCgGGCGCg -3'
miRNA:   3'- cGGCGgUa----GGC-GCCGG-CGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 58411 0.67 0.548053
Target:  5'- cGCgGCgCAg--GCGGCCaGCGCgAGCGCg -3'
miRNA:   3'- -CGgCG-GUaggCGCCGG-CGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 26074 0.67 0.548053
Target:  5'- cGCCGCCG-CUGCGccucuGCCGCgggGCCAacGUGCg -3'
miRNA:   3'- -CGGCGGUaGGCGC-----CGGCG---UGGU--CGUG- -5'
5249 3' -63 NC_001798.1 + 17119 0.67 0.548053
Target:  5'- gGCCGCCcgCgaGCGGUagUGCGCggugaGGCGCg -3'
miRNA:   3'- -CGGCGGuaGg-CGCCG--GCGUGg----UCGUG- -5'
5249 3' -63 NC_001798.1 + 15992 0.67 0.548053
Target:  5'- -gUGCCAUCCgaauaaacguGCGGCCcguaaucccCACCAGCAg -3'
miRNA:   3'- cgGCGGUAGG----------CGCCGGc--------GUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 15568 0.67 0.548053
Target:  5'- uGCCGCCG-CCGCGGCgGgGaguGGCGa -3'
miRNA:   3'- -CGGCGGUaGGCGCCGgCgUgg-UCGUg -5'
5249 3' -63 NC_001798.1 + 43511 0.67 0.547096
Target:  5'- cGCgCGCgCAgguaggCgGCGGCCGCgucucccGCCAGgGCg -3'
miRNA:   3'- -CG-GCG-GUa-----GgCGCCGGCG-------UGGUCgUG- -5'
5249 3' -63 NC_001798.1 + 31463 0.67 0.53851
Target:  5'- cCCGCCGucUCCGC-GCCGC-CCcGCGg -3'
miRNA:   3'- cGGCGGU--AGGCGcCGGCGuGGuCGUg -5'
5249 3' -63 NC_001798.1 + 98579 0.67 0.53851
Target:  5'- gGCCGCgguggCGUCgGCGGCCccggcgGCcCCGGCGg -3'
miRNA:   3'- -CGGCG-----GUAGgCGCCGG------CGuGGUCGUg -5'
5249 3' -63 NC_001798.1 + 61863 0.67 0.53851
Target:  5'- gGCCGCCGgcccagCC-CGGCgGCcCCcucgGGCGCg -3'
miRNA:   3'- -CGGCGGUa-----GGcGCCGgCGuGG----UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.