Results 101 - 120 of 355 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5249 | 3' | -63 | NC_001798.1 | + | 98579 | 0.67 | 0.53851 |
Target: 5'- gGCCGCgguggCGUCgGCGGCCccggcgGCcCCGGCGg -3' miRNA: 3'- -CGGCG-----GUAGgCGCCGG------CGuGGUCGUg -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 31463 | 0.67 | 0.53851 |
Target: 5'- cCCGCCGucUCCGC-GCCGC-CCcGCGg -3' miRNA: 3'- cGGCGGU--AGGCGcCGGCGuGGuCGUg -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 43511 | 0.67 | 0.547096 |
Target: 5'- cGCgCGCgCAgguaggCgGCGGCCGCgucucccGCCAGgGCg -3' miRNA: 3'- -CG-GCG-GUa-----GgCGCCGGCG-------UGGUCgUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 15568 | 0.67 | 0.548053 |
Target: 5'- uGCCGCCG-CCGCGGCgGgGaguGGCGa -3' miRNA: 3'- -CGGCGGUaGGCGCCGgCgUgg-UCGUg -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 15992 | 0.67 | 0.548053 |
Target: 5'- -gUGCCAUCCgaauaaacguGCGGCCcguaaucccCACCAGCAg -3' miRNA: 3'- cgGCGGUAGG----------CGCCGGc--------GUGGUCGUg -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 17119 | 0.67 | 0.548053 |
Target: 5'- gGCCGCCcgCgaGCGGUagUGCGCggugaGGCGCg -3' miRNA: 3'- -CGGCGGuaGg-CGCCG--GCGUGg----UCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 26074 | 0.67 | 0.548053 |
Target: 5'- cGCCGCCG-CUGCGccucuGCCGCgggGCCAacGUGCg -3' miRNA: 3'- -CGGCGGUaGGCGC-----CGGCG---UGGU--CGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 58411 | 0.67 | 0.548053 |
Target: 5'- cGCgGCgCAg--GCGGCCaGCGCgAGCGCg -3' miRNA: 3'- -CGgCG-GUaggCGCCGG-CGUGgUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 149243 | 0.67 | 0.548053 |
Target: 5'- cCCGCgGgggcgUCGcCGGCCgGCGCgGGCGCg -3' miRNA: 3'- cGGCGgUa----GGC-GCCGG-CGUGgUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 61863 | 0.67 | 0.53851 |
Target: 5'- gGCCGCCGgcccagCC-CGGCgGCcCCcucgGGCGCg -3' miRNA: 3'- -CGGCGGUa-----GGcGCCGgCGuGG----UCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 42727 | 0.67 | 0.53851 |
Target: 5'- cGUCGCCAccggCCGagGGcCCGuCGCCcGCACa -3' miRNA: 3'- -CGGCGGUa---GGCg-CC-GGC-GUGGuCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 97017 | 0.67 | 0.529026 |
Target: 5'- cCCGCCgauagcucuucuGUCCGCgaggaGGCCGaCGCCcugcuggaGGCGCa -3' miRNA: 3'- cGGCGG------------UAGGCG-----CCGGC-GUGG--------UCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 9630 | 0.67 | 0.535659 |
Target: 5'- gGCCGCCcccagcaCCGCcccgaggcgcagcgGGCCGCGCgCggagGGCGCg -3' miRNA: 3'- -CGGCGGua-----GGCG--------------CCGGCGUG-G----UCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 78645 | 0.67 | 0.535659 |
Target: 5'- gGUCGCCGUCC-CGGCgaccguggccaagaCGCucgACCAGgCGCg -3' miRNA: 3'- -CGGCGGUAGGcGCCG--------------GCG---UGGUC-GUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 23979 | 0.67 | 0.537559 |
Target: 5'- -aCGCCcugAUCaCGCGGCUGCuguacacGCCGGaCGCg -3' miRNA: 3'- cgGCGG---UAG-GCGCCGGCG-------UGGUC-GUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 32761 | 0.67 | 0.537559 |
Target: 5'- -gCGCCAcCCGUGGUcucgggagcagggCGCGCCcGCGCc -3' miRNA: 3'- cgGCGGUaGGCGCCG-------------GCGUGGuCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 68998 | 0.67 | 0.537559 |
Target: 5'- aCCGCC-UCgGCGGCguCGCGCgcaucguaggcggCGGCGCa -3' miRNA: 3'- cGGCGGuAGgCGCCG--GCGUG-------------GUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 39651 | 0.67 | 0.53851 |
Target: 5'- cGgCGCCG-CCGgGGCCGUAucgaccccggccCCGGCGg -3' miRNA: 3'- -CgGCGGUaGGCgCCGGCGU------------GGUCGUg -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 71082 | 0.67 | 0.53851 |
Target: 5'- aGCCGCguCAgcCCGCGGUCG-GCguGCGCg -3' miRNA: 3'- -CGGCG--GUa-GGCGCCGGCgUGguCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 4350 | 0.67 | 0.53851 |
Target: 5'- gGCgGCCGagCGcCGGCggggggCGCGCCGGCGg -3' miRNA: 3'- -CGgCGGUagGC-GCCG------GCGUGGUCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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