miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 150670 0.76 0.153376
Target:  5'- uCCGCCG-CCGCGGCgucuucgcccacccgCGCGCCuGCGCg -3'
miRNA:   3'- cGGCGGUaGGCGCCG---------------GCGUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 135438 0.75 0.17157
Target:  5'- uUUGCgGUCUGCGGCgGCACCGGgGCu -3'
miRNA:   3'- cGGCGgUAGGCGCCGgCGUGGUCgUG- -5'
5249 3' -63 NC_001798.1 + 145544 0.75 0.180066
Target:  5'- cGCCcgGCCGcCCGC-GUCGCGCCGGCGCc -3'
miRNA:   3'- -CGG--CGGUaGGCGcCGGCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 90388 0.75 0.184453
Target:  5'- cGCCGUCGgggggCGCGGuuGgGCCGGCGCg -3'
miRNA:   3'- -CGGCGGUag---GCGCCggCgUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 153925 0.75 0.175772
Target:  5'- cGCUGUCGUCCGCcuggGGCaccaGCAgCCAGCGCc -3'
miRNA:   3'- -CGGCGGUAGGCG----CCGg---CGU-GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 108580 0.75 0.184453
Target:  5'- gGCCuggguaaCAUUCGCGGCCGCGCCGGacCGCg -3'
miRNA:   3'- -CGGcg-----GUAGGCGCCGGCGUGGUC--GUG- -5'
5249 3' -63 NC_001798.1 + 88668 0.75 0.180066
Target:  5'- gGCCaCCAggcCCGCGGCCGUgagGCCgcGGCACa -3'
miRNA:   3'- -CGGcGGUa--GGCGCCGGCG---UGG--UCGUG- -5'
5249 3' -63 NC_001798.1 + 3134 0.75 0.183127
Target:  5'- cCCGCC-UCCGCGcGCCGgccgccgccaccacCGCCGGCGCc -3'
miRNA:   3'- cGGCGGuAGGCGC-CGGC--------------GUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 144003 0.75 0.184453
Target:  5'- cGCCGCCAgcacguUCCGUagacucGGagGCACCGGCACa -3'
miRNA:   3'- -CGGCGGU------AGGCG------CCggCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 139312 0.75 0.175772
Target:  5'- cGCCGCC--CCGCGuCCGCaucGCCGGCGCc -3'
miRNA:   3'- -CGGCGGuaGGCGCcGGCG---UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 2501 0.75 0.175772
Target:  5'- cGCCGCgGggcgCgGCGGCCGCGgCGGCGg -3'
miRNA:   3'- -CGGCGgUa---GgCGCCGGCGUgGUCGUg -5'
5249 3' -63 NC_001798.1 + 104751 0.75 0.184453
Target:  5'- cGUCGCCGauuaCCGCGGCCagacGCGCCagguAGCGCg -3'
miRNA:   3'- -CGGCGGUa---GGCGCCGG----CGUGG----UCGUG- -5'
5249 3' -63 NC_001798.1 + 78236 0.74 0.207824
Target:  5'- -aCGCCAUCCG-GGCCgacguGCACCGGgCGCu -3'
miRNA:   3'- cgGCGGUAGGCgCCGG-----CGUGGUC-GUG- -5'
5249 3' -63 NC_001798.1 + 124424 0.74 0.193509
Target:  5'- aGCUGCC--CCGCGGUCGCGCgGGC-Cg -3'
miRNA:   3'- -CGGCGGuaGGCGCCGGCGUGgUCGuG- -5'
5249 3' -63 NC_001798.1 + 137943 0.74 0.193509
Target:  5'- gGCCGCCcgguccgCCGCGcGCUGCucccgcuCCAGCGCc -3'
miRNA:   3'- -CGGCGGua-----GGCGC-CGGCGu------GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 117467 0.74 0.207824
Target:  5'- cGCUGCUAgacaaCGCGGCCGCcguguACCuGCGCa -3'
miRNA:   3'- -CGGCGGUag---GCGCCGGCG-----UGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 26344 0.74 0.212795
Target:  5'- -aCGCCGUgCGCGGCgGC-CCGGCGg -3'
miRNA:   3'- cgGCGGUAgGCGCCGgCGuGGUCGUg -5'
5249 3' -63 NC_001798.1 + 9124 0.74 0.193509
Target:  5'- aGCCGCCgcgaggugGUCUGCGGCaCGCggGCgCGGCGCc -3'
miRNA:   3'- -CGGCGG--------UAGGCGCCG-GCG--UG-GUCGUG- -5'
5249 3' -63 NC_001798.1 + 146444 0.74 0.207824
Target:  5'- aGCCcCCGgagcCCGCGGCCGCAgCCgAGCAg -3'
miRNA:   3'- -CGGcGGUa---GGCGCCGGCGU-GG-UCGUg -5'
5249 3' -63 NC_001798.1 + 117560 0.74 0.217867
Target:  5'- -gCGCCcaggugCCGCGG-CGCGCCGGCAUg -3'
miRNA:   3'- cgGCGGua----GGCGCCgGCGUGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.