Results 81 - 100 of 355 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5249 | 3' | -63 | NC_001798.1 | + | 45180 | 0.71 | 0.327719 |
Target: 5'- uCCaCCAUCgaCGgGGCCGUugCGGCGCa -3' miRNA: 3'- cGGcGGUAG--GCgCCGGCGugGUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 108681 | 0.71 | 0.327719 |
Target: 5'- cGCCGCCc-CCGgGGCCGCccGCgGGgACa -3' miRNA: 3'- -CGGCGGuaGGCgCCGGCG--UGgUCgUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 4137 | 0.71 | 0.320659 |
Target: 5'- cGCCGCCc-CCGgGGCCcuCGCgGGCACc -3' miRNA: 3'- -CGGCGGuaGGCgCCGGc-GUGgUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 150814 | 0.71 | 0.334894 |
Target: 5'- cGCCGCCGcugcugcugcUCCGCGGg-GCGCCagggGGCGCc -3' miRNA: 3'- -CGGCGGU----------AGGCGCCggCGUGG----UCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 72829 | 0.71 | 0.320659 |
Target: 5'- gGCCgGCUAUCa--GGCCGCACgcgCGGCACg -3' miRNA: 3'- -CGG-CGGUAGgcgCCGGCGUG---GUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 96163 | 0.71 | 0.334894 |
Target: 5'- cUCGCCA-UgGCGGCCGCGCCcccGGcCGCg -3' miRNA: 3'- cGGCGGUaGgCGCCGGCGUGG---UC-GUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 24856 | 0.71 | 0.334894 |
Target: 5'- --gGCCG-CCGUGGCCGC-CguGCGCg -3' miRNA: 3'- cggCGGUaGGCGCCGGCGuGguCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 150177 | 0.71 | 0.313714 |
Target: 5'- gGCCGCCGcccccUCCGCGGCguggGgGgCGGCACc -3' miRNA: 3'- -CGGCGGU-----AGGCGCCGg---CgUgGUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 48352 | 0.71 | 0.327719 |
Target: 5'- -aCGCgA-CCGCGGCCGC-CCGGgGCc -3' miRNA: 3'- cgGCGgUaGGCGCCGGCGuGGUCgUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 117376 | 0.71 | 0.320659 |
Target: 5'- aCCGCCGU-CGCGGCCacggGCACCGuccGCAa -3' miRNA: 3'- cGGCGGUAgGCGCCGG----CGUGGU---CGUg -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 77410 | 0.71 | 0.327719 |
Target: 5'- gGCCGCCgaccugguaGUCCagGCGcGCCGgGCCuGCGCc -3' miRNA: 3'- -CGGCGG---------UAGG--CGC-CGGCgUGGuCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 54838 | 0.71 | 0.334894 |
Target: 5'- cGCCGCCGacaccaccgCCGCcGCCGCcugGCCGGC-Cg -3' miRNA: 3'- -CGGCGGUa--------GGCGcCGGCG---UGGUCGuG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 27634 | 0.71 | 0.306883 |
Target: 5'- cCCGCCcgCCGCcGCCGCccGCCuucGCGCc -3' miRNA: 3'- cGGCGGuaGGCGcCGGCG--UGGu--CGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 37167 | 0.71 | 0.334894 |
Target: 5'- cGCCGCCuggCG-GGCCGC-UCGGCGCg -3' miRNA: 3'- -CGGCGGuagGCgCCGGCGuGGUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 25142 | 0.71 | 0.327008 |
Target: 5'- cCCGCC--CCGCGGCCGCcccucccgcggggGCC-GCGCc -3' miRNA: 3'- cGGCGGuaGGCGCCGGCG-------------UGGuCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 79366 | 0.71 | 0.327719 |
Target: 5'- -aCGCCAgggCCgGCGGCCagacggGCGCgGGCGCg -3' miRNA: 3'- cgGCGGUa--GG-CGCCGG------CGUGgUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 5957 | 0.71 | 0.334894 |
Target: 5'- gGCCGgCGUCC-CGGUCGCcGCC-GCACc -3' miRNA: 3'- -CGGCgGUAGGcGCCGGCG-UGGuCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 3052 | 0.71 | 0.320659 |
Target: 5'- gGCCGCCAggucgCCGuCGaaGCCcucCGCCAGCGCc -3' miRNA: 3'- -CGGCGGUa----GGC-GC--CGGc--GUGGUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 70957 | 0.71 | 0.306883 |
Target: 5'- cGCCGCCG-CUGCuGGCC-CAguuUCAGCACa -3' miRNA: 3'- -CGGCGGUaGGCG-CCGGcGU---GGUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 71827 | 0.71 | 0.313714 |
Target: 5'- cGCCGCUGUCCGC-GCUGCuCCccgucgGGCGCc -3' miRNA: 3'- -CGGCGGUAGGCGcCGGCGuGG------UCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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