miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 58030 1.09 0.000594
Target:  5'- cGCCGCCAUCCGCGGCCGCACCAGCACc -3'
miRNA:   3'- -CGGCGGUAGGCGCCGGCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 1190 0.87 0.025833
Target:  5'- cGCCGCCcgCCGCGGCCaGCACCGuccccGCGCg -3'
miRNA:   3'- -CGGCGGuaGGCGCCGG-CGUGGU-----CGUG- -5'
5249 3' -63 NC_001798.1 + 25193 0.84 0.043628
Target:  5'- cGCCGCCG-CCGCGGCCGCcgcGCCccgcGGCGCu -3'
miRNA:   3'- -CGGCGGUaGGCGCCGGCG---UGG----UCGUG- -5'
5249 3' -63 NC_001798.1 + 131018 0.82 0.059579
Target:  5'- cGCCGCCAggCGacgGGCCGCAuCCAGCGCg -3'
miRNA:   3'- -CGGCGGUagGCg--CCGGCGU-GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 82015 0.81 0.067781
Target:  5'- aCCGCCG-CCGCGGCCGCcGCCAGacaACa -3'
miRNA:   3'- cGGCGGUaGGCGCCGGCG-UGGUCg--UG- -5'
5249 3' -63 NC_001798.1 + 58687 0.81 0.073213
Target:  5'- cGCCGCCGUCaG-GGCCGCGgCGGCGCg -3'
miRNA:   3'- -CGGCGGUAGgCgCCGGCGUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 115891 0.8 0.081109
Target:  5'- aGCCGCCGUCCGCGGggcguucgaggaCCGCAgcuacCCGGCGg -3'
miRNA:   3'- -CGGCGGUAGGCGCC------------GGCGU-----GGUCGUg -5'
5249 3' -63 NC_001798.1 + 112190 0.8 0.085357
Target:  5'- gGCCGCaCGUcCCGCaGGCCGCGCUGGCGg -3'
miRNA:   3'- -CGGCG-GUA-GGCG-CCGGCGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 7893 0.79 0.092127
Target:  5'- gGCCGCCAUgaauuuuaucgCCGCGGCUGCGCCcuGCGu -3'
miRNA:   3'- -CGGCGGUA-----------GGCGCCGGCGUGGu-CGUg -5'
5249 3' -63 NC_001798.1 + 27931 0.79 0.09692
Target:  5'- cGCCGCCGgggucCCGgcgcCGGCCGCGCCccGGCGCu -3'
miRNA:   3'- -CGGCGGUa----GGC----GCCGGCGUGG--UCGUG- -5'
5249 3' -63 NC_001798.1 + 105271 0.79 0.099404
Target:  5'- uCCGCCucuucggCCGCGGCCGCcgcggucuCCAGCGCc -3'
miRNA:   3'- cGGCGGua-----GGCGCCGGCGu-------GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 114823 0.78 0.104553
Target:  5'- cGCaGCCGUCCGUGGCCGUGCCccgccugacGCACg -3'
miRNA:   3'- -CGgCGGUAGGCGCCGGCGUGGu--------CGUG- -5'
5249 3' -63 NC_001798.1 + 465 0.78 0.11275
Target:  5'- gGCCGCCucccCCGCGGCCGCcuccCCcGCGCc -3'
miRNA:   3'- -CGGCGGua--GGCGCCGGCGu---GGuCGUG- -5'
5249 3' -63 NC_001798.1 + 25270 0.77 0.121544
Target:  5'- cGCCGCCAgccgCCGgGGCCcagccacaCGCCGGCGCc -3'
miRNA:   3'- -CGGCGGUa---GGCgCCGGc-------GUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 153667 0.77 0.125863
Target:  5'- cGCgGCgCGUCCGCgggcggggacgcgggGGCCGcCGCCGGCGCa -3'
miRNA:   3'- -CGgCG-GUAGGCG---------------CCGGC-GUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 81705 0.77 0.127757
Target:  5'- uGCCGCCGcuuucUCCGCcGCCGUGCC-GCGCg -3'
miRNA:   3'- -CGGCGGU-----AGGCGcCGGCGUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 85246 0.77 0.130972
Target:  5'- cCCGCCcccCCGCGGCCGCgcgggGCCGcGCGCg -3'
miRNA:   3'- cGGCGGua-GGCGCCGGCG-----UGGU-CGUG- -5'
5249 3' -63 NC_001798.1 + 93254 0.77 0.134262
Target:  5'- --gGCCAggaaacgcCCGCGGcCCGCGCCGGCGCc -3'
miRNA:   3'- cggCGGUa-------GGCGCC-GGCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 116437 0.77 0.134262
Target:  5'- cGCCGCCGacgaC-CGGCCGCACCGGC-Cg -3'
miRNA:   3'- -CGGCGGUag--GcGCCGGCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 150670 0.76 0.153376
Target:  5'- uCCGCCG-CCGCGGCgucuucgcccacccgCGCGCCuGCGCg -3'
miRNA:   3'- cGGCGGUaGGCGCCG---------------GCGUGGuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.