Results 21 - 40 of 355 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5249 | 3' | -63 | NC_001798.1 | + | 85961 | 0.76 | 0.154507 |
Target: 5'- cGCCGCCGcCCGCaacggggaguucgaGGCCGCcGCCGGgGCg -3' miRNA: 3'- -CGGCGGUaGGCG--------------CCGGCG-UGGUCgUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 135438 | 0.75 | 0.17157 |
Target: 5'- uUUGCgGUCUGCGGCgGCACCGGgGCu -3' miRNA: 3'- cGGCGgUAGGCGCCGgCGUGGUCgUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 153925 | 0.75 | 0.175772 |
Target: 5'- cGCUGUCGUCCGCcuggGGCaccaGCAgCCAGCGCc -3' miRNA: 3'- -CGGCGGUAGGCG----CCGg---CGU-GGUCGUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 139312 | 0.75 | 0.175772 |
Target: 5'- cGCCGCC--CCGCGuCCGCaucGCCGGCGCc -3' miRNA: 3'- -CGGCGGuaGGCGCcGGCG---UGGUCGUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 2501 | 0.75 | 0.175772 |
Target: 5'- cGCCGCgGggcgCgGCGGCCGCGgCGGCGg -3' miRNA: 3'- -CGGCGgUa---GgCGCCGGCGUgGUCGUg -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 145544 | 0.75 | 0.180066 |
Target: 5'- cGCCcgGCCGcCCGC-GUCGCGCCGGCGCc -3' miRNA: 3'- -CGG--CGGUaGGCGcCGGCGUGGUCGUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 88668 | 0.75 | 0.180066 |
Target: 5'- gGCCaCCAggcCCGCGGCCGUgagGCCgcGGCACa -3' miRNA: 3'- -CGGcGGUa--GGCGCCGGCG---UGG--UCGUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 3134 | 0.75 | 0.183127 |
Target: 5'- cCCGCC-UCCGCGcGCCGgccgccgccaccacCGCCGGCGCc -3' miRNA: 3'- cGGCGGuAGGCGC-CGGC--------------GUGGUCGUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 90388 | 0.75 | 0.184453 |
Target: 5'- cGCCGUCGgggggCGCGGuuGgGCCGGCGCg -3' miRNA: 3'- -CGGCGGUag---GCGCCggCgUGGUCGUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 104751 | 0.75 | 0.184453 |
Target: 5'- cGUCGCCGauuaCCGCGGCCagacGCGCCagguAGCGCg -3' miRNA: 3'- -CGGCGGUa---GGCGCCGG----CGUGG----UCGUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 144003 | 0.75 | 0.184453 |
Target: 5'- cGCCGCCAgcacguUCCGUagacucGGagGCACCGGCACa -3' miRNA: 3'- -CGGCGGU------AGGCG------CCggCGUGGUCGUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 108580 | 0.75 | 0.184453 |
Target: 5'- gGCCuggguaaCAUUCGCGGCCGCGCCGGacCGCg -3' miRNA: 3'- -CGGcg-----GUAGGCGCCGGCGUGGUC--GUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 124424 | 0.74 | 0.193509 |
Target: 5'- aGCUGCC--CCGCGGUCGCGCgGGC-Cg -3' miRNA: 3'- -CGGCGGuaGGCGCCGGCGUGgUCGuG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 137943 | 0.74 | 0.193509 |
Target: 5'- gGCCGCCcgguccgCCGCGcGCUGCucccgcuCCAGCGCc -3' miRNA: 3'- -CGGCGGua-----GGCGC-CGGCGu------GGUCGUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 9124 | 0.74 | 0.193509 |
Target: 5'- aGCCGCCgcgaggugGUCUGCGGCaCGCggGCgCGGCGCc -3' miRNA: 3'- -CGGCGG--------UAGGCGCCG-GCG--UG-GUCGUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 25577 | 0.74 | 0.196302 |
Target: 5'- cGCUGCCGggcgaggaccuggCCGCgGGCCGCGCCGGgGg -3' miRNA: 3'- -CGGCGGUa------------GGCG-CCGGCGUGGUCgUg -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 16549 | 0.74 | 0.198182 |
Target: 5'- -gCGCCAaaUCCGCguaccGGCgGCGCCAGCAa -3' miRNA: 3'- cgGCGGU--AGGCG-----CCGgCGUGGUCGUg -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 47025 | 0.74 | 0.202953 |
Target: 5'- aGCCGCCGaaCGCGGCaggCGCACgCGGCGu -3' miRNA: 3'- -CGGCGGUagGCGCCG---GCGUG-GUCGUg -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 28238 | 0.74 | 0.202953 |
Target: 5'- cGCCGCCugccccccgCCGCcGCCGCGCaaggAGCGCg -3' miRNA: 3'- -CGGCGGua-------GGCGcCGGCGUGg---UCGUG- -5' |
|||||||
5249 | 3' | -63 | NC_001798.1 | + | 51936 | 0.74 | 0.202953 |
Target: 5'- gGCCGCCG-CCGU-GCCGCuGCuCAGCGCg -3' miRNA: 3'- -CGGCGGUaGGCGcCGGCG-UG-GUCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home