miRNA display CGI


Results 41 - 60 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 146444 0.74 0.207824
Target:  5'- aGCCcCCGgagcCCGCGGCCGCAgCCgAGCAg -3'
miRNA:   3'- -CGGcGGUa---GGCGCCGGCGU-GG-UCGUg -5'
5249 3' -63 NC_001798.1 + 117467 0.74 0.207824
Target:  5'- cGCUGCUAgacaaCGCGGCCGCcguguACCuGCGCa -3'
miRNA:   3'- -CGGCGGUag---GCGCCGGCG-----UGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 78236 0.74 0.207824
Target:  5'- -aCGCCAUCCG-GGCCgacguGCACCGGgCGCu -3'
miRNA:   3'- cgGCGGUAGGCgCCGG-----CGUGGUC-GUG- -5'
5249 3' -63 NC_001798.1 + 26344 0.74 0.212795
Target:  5'- -aCGCCGUgCGCGGCgGC-CCGGCGg -3'
miRNA:   3'- cgGCGGUAgGCGCCGgCGuGGUCGUg -5'
5249 3' -63 NC_001798.1 + 117560 0.74 0.217867
Target:  5'- -gCGCCcaggugCCGCGG-CGCGCCGGCAUg -3'
miRNA:   3'- cgGCGGua----GGCGCCgGCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 24405 0.74 0.217867
Target:  5'- cGuuGCCGUCgGCGGCgGCgucGCCGGC-Cg -3'
miRNA:   3'- -CggCGGUAGgCGCCGgCG---UGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 121961 0.73 0.223043
Target:  5'- cGCCGCCAcccggUCCGCG--CGCGCCccaAGCACg -3'
miRNA:   3'- -CGGCGGU-----AGGCGCcgGCGUGG---UCGUG- -5'
5249 3' -63 NC_001798.1 + 77182 0.73 0.223566
Target:  5'- cGCCGCCGUcgcgacggcaagucCCgcggcgacgguggacGCGGCCGUGCgGGCGCa -3'
miRNA:   3'- -CGGCGGUA--------------GG---------------CGCCGGCGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 2260 0.73 0.226728
Target:  5'- cGCCGCCGgggggCggggcggcgcagcgCGCGGCCaGCgagGCCAGCGCg -3'
miRNA:   3'- -CGGCGGUa----G--------------GCGCCGG-CG---UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 105411 0.73 0.228323
Target:  5'- gGCCGCCGcggCCGCGGUgCGCuggGCCugcAGCACu -3'
miRNA:   3'- -CGGCGGUa--GGCGCCG-GCG---UGG---UCGUG- -5'
5249 3' -63 NC_001798.1 + 91899 0.73 0.228323
Target:  5'- gGCCGCCAUCCGCaGGCCucucgaaucgccGCuggaGCCuuGCGCc -3'
miRNA:   3'- -CGGCGGUAGGCG-CCGG------------CG----UGGu-CGUG- -5'
5249 3' -63 NC_001798.1 + 134493 0.73 0.233708
Target:  5'- gGCCGCCAUUCGCGacaGCC-C-CCAGUGCg -3'
miRNA:   3'- -CGGCGGUAGGCGC---CGGcGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 43096 0.73 0.2392
Target:  5'- cGCCGCCgcGUCCGCgaccacGGUCGCuuCCGGCGg -3'
miRNA:   3'- -CGGCGG--UAGGCG------CCGGCGu-GGUCGUg -5'
5249 3' -63 NC_001798.1 + 147070 0.73 0.2392
Target:  5'- cCCGCaCcUCgGCGGCCGCccccuCCGGCGCc -3'
miRNA:   3'- cGGCG-GuAGgCGCCGGCGu----GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 109792 0.73 0.244799
Target:  5'- -aCGCCGaucUCCG-GGCCGCGCUAGC-Ca -3'
miRNA:   3'- cgGCGGU---AGGCgCCGGCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 2875 0.73 0.245365
Target:  5'- uGCCGCCGgccacgcgcagguccCCGCGcaggcGCaucaGCACCAGCGCg -3'
miRNA:   3'- -CGGCGGUa--------------GGCGC-----CGg---CGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 138892 0.73 0.250507
Target:  5'- aGCUGgUcgGUCCGCuugGGCCGC-CCGGCGCa -3'
miRNA:   3'- -CGGCgG--UAGGCG---CCGGCGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 54660 0.73 0.250507
Target:  5'- aGCgGCCGgcagCCGCGGCgCGCccgcucgcgGCuCAGCGCg -3'
miRNA:   3'- -CGgCGGUa---GGCGCCG-GCG---------UG-GUCGUG- -5'
5249 3' -63 NC_001798.1 + 22326 0.73 0.256324
Target:  5'- cGCCGCCAcggaCGCGGaCGCGCgGGCGu -3'
miRNA:   3'- -CGGCGGUag--GCGCCgGCGUGgUCGUg -5'
5249 3' -63 NC_001798.1 + 125745 0.73 0.258681
Target:  5'- cGCCGCCA--CGCGGCCcuGCGCCGacguuuggccgagacGCACc -3'
miRNA:   3'- -CGGCGGUagGCGCCGG--CGUGGU---------------CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.