miRNA display CGI


Results 61 - 80 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 113378 0.73 0.258681
Target:  5'- aGCCGCCguccucgccuacuauGUCaCGUGGCUgGCACgGGCGCu -3'
miRNA:   3'- -CGGCGG---------------UAG-GCGCCGG-CGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 184 0.72 0.262251
Target:  5'- gGCUGCCuucCCGCGGgCGCcCCcGCGCg -3'
miRNA:   3'- -CGGCGGua-GGCGCCgGCGuGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 154522 0.72 0.262251
Target:  5'- gGCUGCCuucCCGCGGgCGCcCCcGCGCg -3'
miRNA:   3'- -CGGCGGua-GGCGCCgGCGuGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 28970 0.72 0.274438
Target:  5'- cCCGCCGcUCCGCccgccccagggGGCgGCGCCGGC-Ca -3'
miRNA:   3'- cGGCGGU-AGGCG-----------CCGgCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 97218 0.72 0.280701
Target:  5'- aCCGCCG-CgGUGGCCGUggaGCUGGCGCu -3'
miRNA:   3'- cGGCGGUaGgCGCCGGCG---UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 58098 0.72 0.280701
Target:  5'- cCCGCagggUCGCGGCCGC-CCAGgGCc -3'
miRNA:   3'- cGGCGgua-GGCGCCGGCGuGGUCgUG- -5'
5249 3' -63 NC_001798.1 + 134918 0.72 0.280701
Target:  5'- gGCCGCCG-CCGCcGCCGagUCGGCGCg -3'
miRNA:   3'- -CGGCGGUaGGCGcCGGCguGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 47560 0.72 0.280701
Target:  5'- cGCCGCUccgucaagucguGUCCGCGGgaaGCGCC-GCGCg -3'
miRNA:   3'- -CGGCGG------------UAGGCGCCgg-CGUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 31678 0.72 0.280701
Target:  5'- cGCCGCCcgCCGUgccGGUggacgCGCACCGcGCGCc -3'
miRNA:   3'- -CGGCGGuaGGCG---CCG-----GCGUGGU-CGUG- -5'
5249 3' -63 NC_001798.1 + 147241 0.72 0.280701
Target:  5'- gGCC-CCGgggccCCG-GGCCGCGCCGGCGg -3'
miRNA:   3'- -CGGcGGUa----GGCgCCGGCGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 36228 0.72 0.287076
Target:  5'- cGCCGCCGcgcCCGCGuuucuGCCGC-CCGcGCGCu -3'
miRNA:   3'- -CGGCGGUa--GGCGC-----CGGCGuGGU-CGUG- -5'
5249 3' -63 NC_001798.1 + 5415 0.72 0.287076
Target:  5'- cGCCGCCGcUCCgcccgcGCGGCaucucauuaGCGcCCGGCGCg -3'
miRNA:   3'- -CGGCGGU-AGG------CGCCGg--------CGU-GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 102366 0.72 0.291606
Target:  5'- gGCCGCCGgaagCCcacccgccugGCGGUCGgcggcgauggccccCACCAGCGCg -3'
miRNA:   3'- -CGGCGGUa---GG----------CGCCGGC--------------GUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 118658 0.72 0.293564
Target:  5'- uGCCGaCCAUCCGCcGCCa-GCUGGCGCu -3'
miRNA:   3'- -CGGC-GGUAGGCGcCGGcgUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 146476 0.72 0.293564
Target:  5'- cGCCGCgGgcUCCGgGGCCGgGCCGGg-- -3'
miRNA:   3'- -CGGCGgU--AGGCgCCGGCgUGGUCgug -5'
5249 3' -63 NC_001798.1 + 111145 0.72 0.293564
Target:  5'- cGCUGUCGgcCCGCGcGUCGCuccccACCGGCACg -3'
miRNA:   3'- -CGGCGGUa-GGCGC-CGGCG-----UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 54799 0.72 0.293564
Target:  5'- cGCCGCCAUgcCCGCGGgCGUcggGCuUGGCGCc -3'
miRNA:   3'- -CGGCGGUA--GGCGCCgGCG---UG-GUCGUG- -5'
5249 3' -63 NC_001798.1 + 77656 0.72 0.296191
Target:  5'- gGCCGCCGUcgCCGaccugacggcgaagaUGGCgGC-CCAGCGCg -3'
miRNA:   3'- -CGGCGGUA--GGC---------------GCCGgCGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 70957 0.71 0.306883
Target:  5'- cGCCGCCG-CUGCuGGCC-CAguuUCAGCACa -3'
miRNA:   3'- -CGGCGGUaGGCG-CCGGcGU---GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 27634 0.71 0.306883
Target:  5'- cCCGCCcgCCGCcGCCGCccGCCuucGCGCc -3'
miRNA:   3'- cGGCGGuaGGCGcCGGCG--UGGu--CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.