miRNA display CGI


Results 81 - 100 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 150177 0.71 0.313714
Target:  5'- gGCCGCCGcccccUCCGCGGCguggGgGgCGGCACc -3'
miRNA:   3'- -CGGCGGU-----AGGCGCCGg---CgUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 71827 0.71 0.313714
Target:  5'- cGCCGCUGUCCGC-GCUGCuCCccgucgGGCGCc -3'
miRNA:   3'- -CGGCGGUAGGCGcCGGCGuGG------UCGUG- -5'
5249 3' -63 NC_001798.1 + 4137 0.71 0.320659
Target:  5'- cGCCGCCc-CCGgGGCCcuCGCgGGCACc -3'
miRNA:   3'- -CGGCGGuaGGCgCCGGc-GUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 117376 0.71 0.320659
Target:  5'- aCCGCCGU-CGCGGCCacggGCACCGuccGCAa -3'
miRNA:   3'- cGGCGGUAgGCGCCGG----CGUGGU---CGUg -5'
5249 3' -63 NC_001798.1 + 72829 0.71 0.320659
Target:  5'- gGCCgGCUAUCa--GGCCGCACgcgCGGCACg -3'
miRNA:   3'- -CGG-CGGUAGgcgCCGGCGUG---GUCGUG- -5'
5249 3' -63 NC_001798.1 + 3052 0.71 0.320659
Target:  5'- gGCCGCCAggucgCCGuCGaaGCCcucCGCCAGCGCc -3'
miRNA:   3'- -CGGCGGUa----GGC-GC--CGGc--GUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 25142 0.71 0.327008
Target:  5'- cCCGCC--CCGCGGCCGCcccucccgcggggGCC-GCGCc -3'
miRNA:   3'- cGGCGGuaGGCGCCGGCG-------------UGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 48352 0.71 0.327719
Target:  5'- -aCGCgA-CCGCGGCCGC-CCGGgGCc -3'
miRNA:   3'- cgGCGgUaGGCGCCGGCGuGGUCgUG- -5'
5249 3' -63 NC_001798.1 + 32046 0.71 0.327719
Target:  5'- gGCCGCUcgccccggcGUCCGCGggcGCCGCGCCcccgucGGCGu -3'
miRNA:   3'- -CGGCGG---------UAGGCGC---CGGCGUGG------UCGUg -5'
5249 3' -63 NC_001798.1 + 77410 0.71 0.327719
Target:  5'- gGCCGCCgaccugguaGUCCagGCGcGCCGgGCCuGCGCc -3'
miRNA:   3'- -CGGCGG---------UAGG--CGC-CGGCgUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 79366 0.71 0.327719
Target:  5'- -aCGCCAgggCCgGCGGCCagacggGCGCgGGCGCg -3'
miRNA:   3'- cgGCGGUa--GG-CGCCGG------CGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 45180 0.71 0.327719
Target:  5'- uCCaCCAUCgaCGgGGCCGUugCGGCGCa -3'
miRNA:   3'- cGGcGGUAG--GCgCCGGCGugGUCGUG- -5'
5249 3' -63 NC_001798.1 + 108681 0.71 0.327719
Target:  5'- cGCCGCCc-CCGgGGCCGCccGCgGGgACa -3'
miRNA:   3'- -CGGCGGuaGGCgCCGGCG--UGgUCgUG- -5'
5249 3' -63 NC_001798.1 + 31580 0.71 0.334894
Target:  5'- cGCgCGCCccCgCGCGGCCGuCGCCccGCGCg -3'
miRNA:   3'- -CG-GCGGuaG-GCGCCGGC-GUGGu-CGUG- -5'
5249 3' -63 NC_001798.1 + 9560 0.71 0.334894
Target:  5'- cCCGCCAggaGCGcCUGCGCCAGCAg -3'
miRNA:   3'- cGGCGGUaggCGCcGGCGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 54838 0.71 0.334894
Target:  5'- cGCCGCCGacaccaccgCCGCcGCCGCcugGCCGGC-Cg -3'
miRNA:   3'- -CGGCGGUa--------GGCGcCGGCG---UGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 96163 0.71 0.334894
Target:  5'- cUCGCCA-UgGCGGCCGCGCCcccGGcCGCg -3'
miRNA:   3'- cGGCGGUaGgCGCCGGCGUGG---UC-GUG- -5'
5249 3' -63 NC_001798.1 + 150814 0.71 0.334894
Target:  5'- cGCCGCCGcugcugcugcUCCGCGGg-GCGCCagggGGCGCc -3'
miRNA:   3'- -CGGCGGU----------AGGCGCCggCGUGG----UCGUG- -5'
5249 3' -63 NC_001798.1 + 37167 0.71 0.334894
Target:  5'- cGCCGCCuggCG-GGCCGC-UCGGCGCg -3'
miRNA:   3'- -CGGCGGuagGCgCCGGCGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 24856 0.71 0.334894
Target:  5'- --gGCCG-CCGUGGCCGC-CguGCGCg -3'
miRNA:   3'- cggCGGUaGGCGCCGGCGuGguCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.