miRNA display CGI


Results 101 - 120 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 5957 0.71 0.334894
Target:  5'- gGCCGgCGUCC-CGGUCGCcGCC-GCACc -3'
miRNA:   3'- -CGGCgGUAGGcGCCGGCG-UGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 150814 0.71 0.334894
Target:  5'- cGCCGCCGcugcugcugcUCCGCGGg-GCGCCagggGGCGCc -3'
miRNA:   3'- -CGGCGGU----------AGGCGCCggCGUGG----UCGUG- -5'
5249 3' -63 NC_001798.1 + 146860 0.7 0.341448
Target:  5'- cGCCGCCGaucgagagggacUCCGgagaaggaaGGCugcuccgCGCACCGGCGCg -3'
miRNA:   3'- -CGGCGGU------------AGGCg--------CCG-------GCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 124287 0.7 0.341448
Target:  5'- cCCGCCGcCCGCgcaucacGGCC-CACCuGCACg -3'
miRNA:   3'- cGGCGGUaGGCG-------CCGGcGUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 66031 0.7 0.342182
Target:  5'- uGUgGCgCAUgCCGCgGGUCGC-CCGGCACg -3'
miRNA:   3'- -CGgCG-GUA-GGCG-CCGGCGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 3381 0.7 0.342182
Target:  5'- cGCCGUCGUCgGgGGuUCGCGCCccggucAGCGCc -3'
miRNA:   3'- -CGGCGGUAGgCgCC-GGCGUGG------UCGUG- -5'
5249 3' -63 NC_001798.1 + 98781 0.7 0.349584
Target:  5'- aCCGUCG-CCGcCGGCCaCGCCAGCuGCg -3'
miRNA:   3'- cGGCGGUaGGC-GCCGGcGUGGUCG-UG- -5'
5249 3' -63 NC_001798.1 + 23485 0.7 0.349584
Target:  5'- -aCGCCGcCCGCGcCCcCGCCAGCGCc -3'
miRNA:   3'- cgGCGGUaGGCGCcGGcGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 83840 0.7 0.349584
Target:  5'- gGCCGguccCCGUCCG-GGCgGCGCUGGCGg -3'
miRNA:   3'- -CGGC----GGUAGGCgCCGgCGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 29817 0.7 0.349584
Target:  5'- aGCgGCCG-CCGCGGCagacCcCCGGCACg -3'
miRNA:   3'- -CGgCGGUaGGCGCCGgc--GuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 34792 0.7 0.349584
Target:  5'- cGCCGCCGg-CGCGGCCcgggGCcCCGGgGCc -3'
miRNA:   3'- -CGGCGGUagGCGCCGG----CGuGGUCgUG- -5'
5249 3' -63 NC_001798.1 + 123396 0.7 0.35408
Target:  5'- -aCGCCAggccccccgggagCCGCGGCCcCGCCGGguCa -3'
miRNA:   3'- cgGCGGUa------------GGCGCCGGcGUGGUCguG- -5'
5249 3' -63 NC_001798.1 + 2396 0.7 0.3571
Target:  5'- gGCCuCCAgggCgGCGGCCgaggGCGCCGGCGu -3'
miRNA:   3'- -CGGcGGUa--GgCGCCGG----CGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 25885 0.7 0.3571
Target:  5'- cCCGCCGacgggcCCGUGGUcuCGCGgCAGCACg -3'
miRNA:   3'- cGGCGGUa-----GGCGCCG--GCGUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 22938 0.7 0.3571
Target:  5'- cGCCGCCG-CCGauGCCGUGCCgacgaGGCGg -3'
miRNA:   3'- -CGGCGGUaGGCgcCGGCGUGG-----UCGUg -5'
5249 3' -63 NC_001798.1 + 102909 0.7 0.3571
Target:  5'- uGCCGCCG-CCGCucGGCCacaagGCuCCAGCGg -3'
miRNA:   3'- -CGGCGGUaGGCG--CCGG-----CGuGGUCGUg -5'
5249 3' -63 NC_001798.1 + 35448 0.7 0.3571
Target:  5'- gGCCGCUGgcgCCGCGGCCcGUcuGCUGGCccGCg -3'
miRNA:   3'- -CGGCGGUa--GGCGCCGG-CG--UGGUCG--UG- -5'
5249 3' -63 NC_001798.1 + 125296 0.7 0.364728
Target:  5'- gGCgCGCCA-CCGC--CCGCACCAGCuCg -3'
miRNA:   3'- -CG-GCGGUaGGCGccGGCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 86263 0.7 0.364728
Target:  5'- aCgGCCGggggCGCGGgCGCACCGGCGg -3'
miRNA:   3'- cGgCGGUag--GCGCCgGCGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 141123 0.7 0.372468
Target:  5'- cGCCGCCGg-CGCaucggcaaccagGGCCGCcgacACCAGCGa -3'
miRNA:   3'- -CGGCGGUagGCG------------CCGGCG----UGGUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.