miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 24613 0.66 0.606218
Target:  5'- gGCCGCCugCCGCGGgauCCuggagGCGCUGGCGg -3'
miRNA:   3'- -CGGCGGuaGGCGCC---GG-----CGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 51245 0.66 0.606218
Target:  5'- aGCCaGuCCGUUCGCGGaCGCcgggaCAGCGCc -3'
miRNA:   3'- -CGG-C-GGUAGGCGCCgGCGug---GUCGUG- -5'
5249 3' -63 NC_001798.1 + 96338 0.66 0.606218
Target:  5'- aGgUGCgCGUgCUGCGGCgGCACCuGCGg -3'
miRNA:   3'- -CgGCG-GUA-GGCGCCGgCGUGGuCGUg -5'
5249 3' -63 NC_001798.1 + 2662 0.66 0.606218
Target:  5'- uGCgCGCCucCCGCGGCgCGgagGCgGGCGCg -3'
miRNA:   3'- -CG-GCGGuaGGCGCCG-GCg--UGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 4755 0.66 0.606218
Target:  5'- gGCCGCC--UCGuCGGCaucgGCAUCGGCGg -3'
miRNA:   3'- -CGGCGGuaGGC-GCCGg---CGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 57155 0.66 0.606218
Target:  5'- aGCCGCgGgCUgGCGcCCGgGCCGGCGCc -3'
miRNA:   3'- -CGGCGgUaGG-CGCcGGCgUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 72925 0.66 0.606218
Target:  5'- cGCgCGCUggUCGUGGCgCGCuucGCCAGCuCg -3'
miRNA:   3'- -CG-GCGGuaGGCGCCG-GCG---UGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 75465 0.66 0.606218
Target:  5'- gGCCgGCCcggCCGCGGCCcugcuggacuuCACCcuGCGCa -3'
miRNA:   3'- -CGG-CGGua-GGCGCCGGc----------GUGGu-CGUG- -5'
5249 3' -63 NC_001798.1 + 152229 0.66 0.606218
Target:  5'- uCUGCCG-CgGCGGCCGC-UCGGgGCc -3'
miRNA:   3'- cGGCGGUaGgCGCCGGCGuGGUCgUG- -5'
5249 3' -63 NC_001798.1 + 54538 0.66 0.606218
Target:  5'- cCCGCaCGUCgaCGCGGCCG-ACCGGgGu -3'
miRNA:   3'- cGGCG-GUAG--GCGCCGGCgUGGUCgUg -5'
5249 3' -63 NC_001798.1 + 42825 0.66 0.600351
Target:  5'- -aCGCgGgCCGCGGgaaacaacagcugaaCCGcCGCCAGCGCc -3'
miRNA:   3'- cgGCGgUaGGCGCC---------------GGC-GUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 39426 0.66 0.596444
Target:  5'- cGCgGCCGUCCGCGuGCgGgGgggucagggaCAGCGCc -3'
miRNA:   3'- -CGgCGGUAGGCGC-CGgCgUg---------GUCGUG- -5'
5249 3' -63 NC_001798.1 + 48385 0.66 0.596444
Target:  5'- gGCgUGCCG-CCGCGaCCGCACgGGCc- -3'
miRNA:   3'- -CG-GCGGUaGGCGCcGGCGUGgUCGug -5'
5249 3' -63 NC_001798.1 + 51169 0.66 0.596444
Target:  5'- -aCGCgCGUCCGaGGCCcggGCGgCGGCGCc -3'
miRNA:   3'- cgGCG-GUAGGCgCCGG---CGUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 52946 0.66 0.596444
Target:  5'- cGCCGCCcUCCG-GGC-GCACguguccgggaGGCGCg -3'
miRNA:   3'- -CGGCGGuAGGCgCCGgCGUGg---------UCGUG- -5'
5249 3' -63 NC_001798.1 + 65348 0.66 0.596444
Target:  5'- gGCUuCCggUgGUGGCCGCGCUGcGCACg -3'
miRNA:   3'- -CGGcGGuaGgCGCCGGCGUGGU-CGUG- -5'
5249 3' -63 NC_001798.1 + 80609 0.66 0.596444
Target:  5'- --gGCCAgcaCGUGGCCGUGCUGGC-Cg -3'
miRNA:   3'- cggCGGUag-GCGCCGGCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 94569 0.66 0.596444
Target:  5'- gGCCGCCAaggCGCgGGUCGCcaGCCuccagAGCGCc -3'
miRNA:   3'- -CGGCGGUag-GCG-CCGGCG--UGG-----UCGUG- -5'
5249 3' -63 NC_001798.1 + 122788 0.66 0.596444
Target:  5'- aCCGCguacgCCcUGGCCGUGCUGGCGCa -3'
miRNA:   3'- cGGCGgua--GGcGCCGGCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 28813 0.66 0.596444
Target:  5'- uCCGCCG-CCGCGGgcCCGgGCCgucgGGCGg -3'
miRNA:   3'- cGGCGGUaGGCGCC--GGCgUGG----UCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.