miRNA display CGI


Results 41 - 60 of 355 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 122788 0.66 0.596444
Target:  5'- aCCGCguacgCCcUGGCCGUGCUGGCGCa -3'
miRNA:   3'- cGGCGgua--GGcGCCGGCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 74409 0.66 0.595468
Target:  5'- cGCCGgCGgaccugaccgCCGCGGCCcugcaccucuacgGgGCCAGCGa -3'
miRNA:   3'- -CGGCgGUa---------GGCGCCGG-------------CgUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 31628 0.66 0.595468
Target:  5'- cGCCGCCG-CCGCccCCGUggugucuGCgAGCGCg -3'
miRNA:   3'- -CGGCGGUaGGCGccGGCG-------UGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 86979 0.66 0.593516
Target:  5'- cGCCGUCGcuaCCGCGGCuucuucgccgcccuCGC-CCAGaCGCc -3'
miRNA:   3'- -CGGCGGUa--GGCGCCG--------------GCGuGGUC-GUG- -5'
5249 3' -63 NC_001798.1 + 128256 0.66 0.586694
Target:  5'- gGCCGgCAUgguggaCCGCgGGCUcgGCCGGCACc -3'
miRNA:   3'- -CGGCgGUA------GGCG-CCGGcgUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 129676 0.66 0.586694
Target:  5'- cGUgGUCAcccgggcgCCGgGGCCccaGUACCGGCGCg -3'
miRNA:   3'- -CGgCGGUa-------GGCgCCGG---CGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 4077 0.66 0.586694
Target:  5'- cGCgGUCG-CCGCGGggguCCGgGCCGGgGCg -3'
miRNA:   3'- -CGgCGGUaGGCGCC----GGCgUGGUCgUG- -5'
5249 3' -63 NC_001798.1 + 46183 0.66 0.586694
Target:  5'- aGCagGCCucugGUCCGuCGGCCGCGCgCAaUACg -3'
miRNA:   3'- -CGg-CGG----UAGGC-GCCGGCGUG-GUcGUG- -5'
5249 3' -63 NC_001798.1 + 62450 0.66 0.586694
Target:  5'- cGUCGCCGg-UG-GGCCGCGCgaCGGCGCc -3'
miRNA:   3'- -CGGCGGUagGCgCCGGCGUG--GUCGUG- -5'
5249 3' -63 NC_001798.1 + 70284 0.66 0.586694
Target:  5'- cGCCGCCA-CgGCGGCguuucUGUugUcgGGCGCg -3'
miRNA:   3'- -CGGCGGUaGgCGCCG-----GCGugG--UCGUG- -5'
5249 3' -63 NC_001798.1 + 75570 0.66 0.586694
Target:  5'- gGCCGCCca-C-CGGCCcCucauCCAGCACg -3'
miRNA:   3'- -CGGCGGuagGcGCCGGcGu---GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 99958 0.66 0.586694
Target:  5'- -gCGCCA-CUGCGGgaggCGC-CCAGCGCc -3'
miRNA:   3'- cgGCGGUaGGCGCCg---GCGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 124350 0.66 0.586694
Target:  5'- -gCGUCAUCCGC--CCG-ACCAGCGCc -3'
miRNA:   3'- cgGCGGUAGGCGccGGCgUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 96825 0.66 0.586694
Target:  5'- cGCCGCC--UgGCGGaCCGCAUCuGUAa -3'
miRNA:   3'- -CGGCGGuaGgCGCC-GGCGUGGuCGUg -5'
5249 3' -63 NC_001798.1 + 88353 0.66 0.576974
Target:  5'- cGCCuGCaGUCCcucgggcaGgGGUCGCGCCAGcCACu -3'
miRNA:   3'- -CGG-CGgUAGG--------CgCCGGCGUGGUC-GUG- -5'
5249 3' -63 NC_001798.1 + 97402 0.66 0.576974
Target:  5'- cGCCGCUG-CUGCGGCgGCucgUCAGCc- -3'
miRNA:   3'- -CGGCGGUaGGCGCCGgCGu--GGUCGug -5'
5249 3' -63 NC_001798.1 + 145011 0.66 0.576974
Target:  5'- -gCGCCAagaaacaucgUCCGCGGggguCCGCAUgcaaGGCACu -3'
miRNA:   3'- cgGCGGU----------AGGCGCC----GGCGUGg---UCGUG- -5'
5249 3' -63 NC_001798.1 + 23250 0.66 0.576974
Target:  5'- uCCGCgGUCCGCgGGgCGUACCcGgACc -3'
miRNA:   3'- cGGCGgUAGGCG-CCgGCGUGGuCgUG- -5'
5249 3' -63 NC_001798.1 + 36995 0.66 0.576974
Target:  5'- cGCCcCCAUacgagagUGUGGCCgGCGCgAGCGCg -3'
miRNA:   3'- -CGGcGGUAg------GCGCCGG-CGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 35732 0.66 0.576974
Target:  5'- uCCGCCAUCCucccgccCGGCCGC-CCAcucccCGCu -3'
miRNA:   3'- cGGCGGUAGGc------GCCGGCGuGGUc----GUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.