miRNA display CGI


Results 61 - 80 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 36995 0.66 0.576974
Target:  5'- cGCCcCCAUacgagagUGUGGCCgGCGCgAGCGCg -3'
miRNA:   3'- -CGGcGGUAg------GCGCCGG-CGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 53908 0.66 0.576974
Target:  5'- uGCgCGCCAccuggaCCGCgGGCC-CAgCGGCACc -3'
miRNA:   3'- -CG-GCGGUa-----GGCG-CCGGcGUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 135771 0.66 0.576004
Target:  5'- gGCgGCCggCCGcCGGCC-CGCCGgaggaggccguguGCGCg -3'
miRNA:   3'- -CGgCGGuaGGC-GCCGGcGUGGU-------------CGUG- -5'
5249 3' -63 NC_001798.1 + 88770 0.66 0.571159
Target:  5'- gGCCGCC-UCCGgaaaguCGGCCaGCagcugaucgaacuccGcCCAGCGCg -3'
miRNA:   3'- -CGGCGGuAGGC------GCCGG-CG---------------U-GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 134436 0.66 0.56729
Target:  5'- gGCC-CUGUCCGCGcGCgucgccgaGCACCccGGCGCg -3'
miRNA:   3'- -CGGcGGUAGGCGC-CGg-------CGUGG--UCGUG- -5'
5249 3' -63 NC_001798.1 + 69758 0.66 0.56729
Target:  5'- uCCGgUGUCCGacuGGCUGgGCCGGUGCa -3'
miRNA:   3'- cGGCgGUAGGCg--CCGGCgUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 1613 0.66 0.56729
Target:  5'- aCCGCaCGUuggccCCGCGGCagaggcgcaGCGgCGGCGCg -3'
miRNA:   3'- cGGCG-GUA-----GGCGCCGg--------CGUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 14814 0.66 0.56729
Target:  5'- cGCC-CCG-CC-CGGCCGCGCCAaaguuGUGCu -3'
miRNA:   3'- -CGGcGGUaGGcGCCGGCGUGGU-----CGUG- -5'
5249 3' -63 NC_001798.1 + 25077 0.66 0.56729
Target:  5'- cGCCccgGCCAgggcgCCGCcgGGCgGCGCCccGCGCc -3'
miRNA:   3'- -CGG---CGGUa----GGCG--CCGgCGUGGu-CGUG- -5'
5249 3' -63 NC_001798.1 + 39564 0.66 0.56729
Target:  5'- gGCCGuCCGUCCGCG-CCGaCGCgGGg-- -3'
miRNA:   3'- -CGGC-GGUAGGCGCcGGC-GUGgUCgug -5'
5249 3' -63 NC_001798.1 + 56785 0.66 0.56729
Target:  5'- gGCCcugGCCG-CCGaCGGCCGCGgaGGuCACg -3'
miRNA:   3'- -CGG---CGGUaGGC-GCCGGCGUggUC-GUG- -5'
5249 3' -63 NC_001798.1 + 75167 0.66 0.55861
Target:  5'- cGUCGCCGUCCGUgcucgagacgcugggGGCCcgccgccccccggaGCcccCCGGCGCc -3'
miRNA:   3'- -CGGCGGUAGGCG---------------CCGG--------------CGu--GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 109434 0.66 0.557648
Target:  5'- gGCgGCCcgCCuGCGGCuggaggCGCGCCucgGGCAUc -3'
miRNA:   3'- -CGgCGGuaGG-CGCCG------GCGUGG---UCGUG- -5'
5249 3' -63 NC_001798.1 + 150026 0.66 0.557648
Target:  5'- gGUCGCCcgaguccgaGUCCGgGGCCcgGCG-CGGCGCc -3'
miRNA:   3'- -CGGCGG---------UAGGCgCCGG--CGUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 27976 0.66 0.557648
Target:  5'- uGCCGCgccccggcgcucCAgCCGU-GCCGCGCCccGGCGCg -3'
miRNA:   3'- -CGGCG------------GUaGGCGcCGGCGUGG--UCGUG- -5'
5249 3' -63 NC_001798.1 + 121275 0.66 0.557648
Target:  5'- uCCGCCcucGUgCGCGGCCGCcCCgacgguggGGCGg -3'
miRNA:   3'- cGGCGG---UAgGCGCCGGCGuGG--------UCGUg -5'
5249 3' -63 NC_001798.1 + 138566 0.66 0.556686
Target:  5'- gGUCGCCgGUCCacaggggGgGGCacaGCACCAGgCACu -3'
miRNA:   3'- -CGGCGG-UAGG-------CgCCGg--CGUGGUC-GUG- -5'
5249 3' -63 NC_001798.1 + 149243 0.67 0.548053
Target:  5'- cCCGCgGgggcgUCGcCGGCCgGCGCgGGCGCg -3'
miRNA:   3'- cGGCGgUa----GGC-GCCGG-CGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 58411 0.67 0.548053
Target:  5'- cGCgGCgCAg--GCGGCCaGCGCgAGCGCg -3'
miRNA:   3'- -CGgCG-GUaggCGCCGG-CGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 26074 0.67 0.548053
Target:  5'- cGCCGCCG-CUGCGccucuGCCGCgggGCCAacGUGCg -3'
miRNA:   3'- -CGGCGGUaGGCGC-----CGGCG---UGGU--CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.