Results 1 - 20 of 355 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5249 | 3' | -63 | NC_001798.1 | + | 140 | 0.66 | 0.616011 |
Target: 5'- gGCCGCUcccCCGCGGgCGcCGCCccuccccccGCGCg -3' miRNA: 3'- -CGGCGGua-GGCGCCgGC-GUGGu--------CGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 184 | 0.72 | 0.262251 |
Target: 5'- gGCUGCCuucCCGCGGgCGCcCCcGCGCg -3' miRNA: 3'- -CGGCGGua-GGCGCCgGCGuGGuCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 465 | 0.78 | 0.11275 |
Target: 5'- gGCCGCCucccCCGCGGCCGCcuccCCcGCGCc -3' miRNA: 3'- -CGGCGGua--GGCGCCGGCGu---GGuCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 1190 | 0.87 | 0.025833 |
Target: 5'- cGCCGCCcgCCGCGGCCaGCACCGuccccGCGCg -3' miRNA: 3'- -CGGCGGuaGGCGCCGG-CGUGGU-----CGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 1261 | 0.67 | 0.529026 |
Target: 5'- cCCG-CGUCCGCGucGUCGCG-CAGCACc -3' miRNA: 3'- cGGCgGUAGGCGC--CGGCGUgGUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 1357 | 0.7 | 0.38828 |
Target: 5'- uCCGCCGggccgCCGCGcacggcGUCGCGCCccAGCGCc -3' miRNA: 3'- cGGCGGUa----GGCGC------CGGCGUGG--UCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 1405 | 0.67 | 0.519603 |
Target: 5'- gGCCGCag-CgGCGcGCCcagGCcCCAGCGCg -3' miRNA: 3'- -CGGCGguaGgCGC-CGG---CGuGGUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 1496 | 0.66 | 0.616011 |
Target: 5'- cGUCGCCcgcgcCCGaggcggcggccCGGCCGU-CCAGCGCc -3' miRNA: 3'- -CGGCGGua---GGC-----------GCCGGCGuGGUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 1613 | 0.66 | 0.56729 |
Target: 5'- aCCGCaCGUuggccCCGCGGCagaggcgcaGCGgCGGCGCg -3' miRNA: 3'- cGGCG-GUA-----GGCGCCGg--------CGUgGUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 1699 | 0.7 | 0.38828 |
Target: 5'- cCCgGCCcgaacaCGCGGCCGgagGCCAGCACg -3' miRNA: 3'- cGG-CGGuag---GCGCCGGCg--UGGUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 1733 | 0.7 | 0.380319 |
Target: 5'- uGCgGCgCAggucCCGC-GCCGCcgGCCAGCGCa -3' miRNA: 3'- -CGgCG-GUa---GGCGcCGGCG--UGGUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 1828 | 0.69 | 0.438273 |
Target: 5'- gGCCcgucggcggGCCAgUCCGCGGCgCGCA-CGGCGu -3' miRNA: 3'- -CGG---------CGGU-AGGCGCCG-GCGUgGUCGUg -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 2204 | 0.67 | 0.500962 |
Target: 5'- gGCCGCCG--CGCGGCgcagCGgGCCcgaGGCGCg -3' miRNA: 3'- -CGGCGGUagGCGCCG----GCgUGG---UCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 2260 | 0.73 | 0.226728 |
Target: 5'- cGCCGCCGgggggCggggcggcgcagcgCGCGGCCaGCgagGCCAGCGCg -3' miRNA: 3'- -CGGCGGUa----G--------------GCGCCGG-CG---UGGUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 2396 | 0.7 | 0.3571 |
Target: 5'- gGCCuCCAgggCgGCGGCCgaggGCGCCGGCGu -3' miRNA: 3'- -CGGcGGUa--GgCGCCGG----CGUGGUCGUg -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 2436 | 0.66 | 0.616011 |
Target: 5'- gGCC-CCggCgGCuGGCgGCGCCAGC-Cg -3' miRNA: 3'- -CGGcGGuaGgCG-CCGgCGUGGUCGuG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 2501 | 0.75 | 0.175772 |
Target: 5'- cGCCGCgGggcgCgGCGGCCGCGgCGGCGg -3' miRNA: 3'- -CGGCGgUa---GgCGCCGGCGUgGUCGUg -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 2662 | 0.66 | 0.606218 |
Target: 5'- uGCgCGCCucCCGCGGCgCGgagGCgGGCGCg -3' miRNA: 3'- -CG-GCGGuaGGCGCCG-GCg--UGgUCGUG- -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 2757 | 0.67 | 0.529026 |
Target: 5'- --aGCagGUCCGCGGCgGCGgCGGCGg -3' miRNA: 3'- cggCGg-UAGGCGCCGgCGUgGUCGUg -5' |
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5249 | 3' | -63 | NC_001798.1 | + | 2793 | 0.66 | 0.606218 |
Target: 5'- aGgCGCgGgcUCCGCGGCaGCGCCGGg-- -3' miRNA: 3'- -CgGCGgU--AGGCGCCGgCGUGGUCgug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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