miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 140 0.66 0.616011
Target:  5'- gGCCGCUcccCCGCGGgCGcCGCCccuccccccGCGCg -3'
miRNA:   3'- -CGGCGGua-GGCGCCgGC-GUGGu--------CGUG- -5'
5249 3' -63 NC_001798.1 + 184 0.72 0.262251
Target:  5'- gGCUGCCuucCCGCGGgCGCcCCcGCGCg -3'
miRNA:   3'- -CGGCGGua-GGCGCCgGCGuGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 465 0.78 0.11275
Target:  5'- gGCCGCCucccCCGCGGCCGCcuccCCcGCGCc -3'
miRNA:   3'- -CGGCGGua--GGCGCCGGCGu---GGuCGUG- -5'
5249 3' -63 NC_001798.1 + 1190 0.87 0.025833
Target:  5'- cGCCGCCcgCCGCGGCCaGCACCGuccccGCGCg -3'
miRNA:   3'- -CGGCGGuaGGCGCCGG-CGUGGU-----CGUG- -5'
5249 3' -63 NC_001798.1 + 1261 0.67 0.529026
Target:  5'- cCCG-CGUCCGCGucGUCGCG-CAGCACc -3'
miRNA:   3'- cGGCgGUAGGCGC--CGGCGUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 1357 0.7 0.38828
Target:  5'- uCCGCCGggccgCCGCGcacggcGUCGCGCCccAGCGCc -3'
miRNA:   3'- cGGCGGUa----GGCGC------CGGCGUGG--UCGUG- -5'
5249 3' -63 NC_001798.1 + 1405 0.67 0.519603
Target:  5'- gGCCGCag-CgGCGcGCCcagGCcCCAGCGCg -3'
miRNA:   3'- -CGGCGguaGgCGC-CGG---CGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 1496 0.66 0.616011
Target:  5'- cGUCGCCcgcgcCCGaggcggcggccCGGCCGU-CCAGCGCc -3'
miRNA:   3'- -CGGCGGua---GGC-----------GCCGGCGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 1613 0.66 0.56729
Target:  5'- aCCGCaCGUuggccCCGCGGCagaggcgcaGCGgCGGCGCg -3'
miRNA:   3'- cGGCG-GUA-----GGCGCCGg--------CGUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 1699 0.7 0.38828
Target:  5'- cCCgGCCcgaacaCGCGGCCGgagGCCAGCACg -3'
miRNA:   3'- cGG-CGGuag---GCGCCGGCg--UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 1733 0.7 0.380319
Target:  5'- uGCgGCgCAggucCCGC-GCCGCcgGCCAGCGCa -3'
miRNA:   3'- -CGgCG-GUa---GGCGcCGGCG--UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 1828 0.69 0.438273
Target:  5'- gGCCcgucggcggGCCAgUCCGCGGCgCGCA-CGGCGu -3'
miRNA:   3'- -CGG---------CGGU-AGGCGCCG-GCGUgGUCGUg -5'
5249 3' -63 NC_001798.1 + 2204 0.67 0.500962
Target:  5'- gGCCGCCG--CGCGGCgcagCGgGCCcgaGGCGCg -3'
miRNA:   3'- -CGGCGGUagGCGCCG----GCgUGG---UCGUG- -5'
5249 3' -63 NC_001798.1 + 2260 0.73 0.226728
Target:  5'- cGCCGCCGgggggCggggcggcgcagcgCGCGGCCaGCgagGCCAGCGCg -3'
miRNA:   3'- -CGGCGGUa----G--------------GCGCCGG-CG---UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 2396 0.7 0.3571
Target:  5'- gGCCuCCAgggCgGCGGCCgaggGCGCCGGCGu -3'
miRNA:   3'- -CGGcGGUa--GgCGCCGG----CGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 2436 0.66 0.616011
Target:  5'- gGCC-CCggCgGCuGGCgGCGCCAGC-Cg -3'
miRNA:   3'- -CGGcGGuaGgCG-CCGgCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 2501 0.75 0.175772
Target:  5'- cGCCGCgGggcgCgGCGGCCGCGgCGGCGg -3'
miRNA:   3'- -CGGCGgUa---GgCGCCGGCGUgGUCGUg -5'
5249 3' -63 NC_001798.1 + 2662 0.66 0.606218
Target:  5'- uGCgCGCCucCCGCGGCgCGgagGCgGGCGCg -3'
miRNA:   3'- -CG-GCGGuaGGCGCCG-GCg--UGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 2757 0.67 0.529026
Target:  5'- --aGCagGUCCGCGGCgGCGgCGGCGg -3'
miRNA:   3'- cggCGg-UAGGCGCCGgCGUgGUCGUg -5'
5249 3' -63 NC_001798.1 + 2793 0.66 0.606218
Target:  5'- aGgCGCgGgcUCCGCGGCaGCGCCGGg-- -3'
miRNA:   3'- -CgGCGgU--AGGCGCCGgCGUGGUCgug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.